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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5492-RA through 18771 annotations produced 1 hits



Tetraspanin 74F (Tsp74F):

Annotation Number : CG5492
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036769
Gbrowse : chr3L:17884916-17888954 (-) // 100.0 //
Probeset : 1626546_s_at
Accessions : protein= NP_524132; /// NP_730317;, nucleotide= NM_079408; /// NM_168754;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0036769.
BDGP gene expression has embryonic in situ data for Tsp74F: 25 pix of staining in 12 body parts.
Homophila reports that CG5492 is a close match (5e-15) to human gene CD151;MER2;PETA3;SFA1 (NP_620599), a gene associated with Nephropathy with pretibial epidermolysis bullosa and deafness, 609057 (3);[Blood group, Raph], 179620 (3).
BioGrid reports that CG5492 interacts with CG6520 .
TRiP has 1 RNAi stocks for FBgn0036769 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 14 of 4 0.00Down
Head641 ± 294 of 4 1.60Up
Eye316 ± 244 of 4 0.77None
Thoracicoabdominal ganglion15 ± 14 of 4 0.00Down
Salivary gland38 ± 54 of 4 0.09Down
Crop495 ± 114 of 4 1.20None
Midgut14 ± 14 of 4 0.00Down
Tubule27 ± 54 of 4 0.10Down
Hindgut1339 ± 494 of 4 3.30Up
Heart27 ± 14 of 4 0.07Down
Fat body40 ± 94 of 4 0.10Down
Ovary746 ± 34 of 4 1.80Up
Testis23 ± 14 of 4 0.10Down
Male accessory glands12 ± 14 of 4 0.00Down
Virgin spermatheca117 ± 24 of 4 0.29Down
Mated spermatheca145 ± 214 of 4 0.35Down
Adult carcass516 ± 184 of 4 1.30None
Larval CNS10 ± 34 of 4 0.03Down
Larval Salivary gland19 ± 14 of 4 0.05Down
Larval midgut19 ± 04 of 4 0.05Down
Larval tubule8 ± 12 of 4 0.00Down
Larval hindgut706 ± 234 of 4 1.72Up
Larval fat body11 ± 22 of 4 0.00Down
Larval trachea721 ± 184 of 4 1.76Up
Larval carcass235 ± 124 of 4 0.57Down
S2 cells (growing)7 ± 13 of 4 0.02Down
Whole fly411 ± 354 of 4

Looking for CG5492-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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