FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5498-RB through 18771 annotations produced 1 hits

transcript 2 (CG5498):

Annotation Number : CG5498
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027565
Gbrowse : chr3L:20375504-20377194 (-) // 100.0 //
Probeset : 1631723_at
Accessions : protein= NP_730525;, nucleotide= NM_168850;
FlyMine data for FBgn0027565.
VDRC has 3 RNAi stocks for FBgn0027565 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	100 ± 3	4 of 4	0.70	Down
Head	121 ± 4	4 of 4	0.80	Down
Eye	176 ± 8	4 of 4	1.22	Up
Thoracicoabdominal ganglion	91 ± 1	4 of 4	0.60	Down
Salivary gland	116 ± 10	4 of 4	0.81	None
Crop	236 ± 8	4 of 4	1.60	Up
Midgut	83 ± 4	4 of 4	0.60	Down
Tubule	93 ± 3	4 of 4	0.60	Down
Hindgut	135 ± 4	4 of 4	0.90	None
Heart	114 ± 6	4 of 4	0.79	Down
Fat body	83 ± 8	4 of 4	0.58	Down
Ovary	229 ± 6	4 of 4	1.60	Up
Testis	97 ± 2	4 of 4	0.70	Down
Male accessory glands	124 ± 9	4 of 4	0.90	None
Virgin spermatheca	107 ± 8	4 of 4	0.74	Down
Mated spermatheca	119 ± 11	4 of 4	0.83	None
Adult carcass	136 ± 7	4 of 4	0.90	None
Larval CNS	124 ± 11	4 of 4	0.86	None
Larval Salivary gland	110 ± 4	4 of 4	0.76	Down
Larval midgut	73 ± 9	4 of 4	0.51	Down
Larval tubule	151 ± 7	4 of 4	1.10	None
Larval hindgut	85 ± 12	4 of 4	0.59	Down
Larval fat body	113 ± 1	4 of 4	0.80	Down
Larval trachea	146 ± 33	4 of 4	1.01	None
Larval carcass	100 ± 7	4 of 4	0.70	Down
S2 cells (growing)	149 ± 8	4 of 4	1.04	None
Whole fly	144 ± 6	4 of 4

Looking for CG5498-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720