FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5499-RA through 18771 annotations produced 1 hits

Histone H2A variant (His2Av):

Annotation Number : CG5499
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001197
Gbrowse : chr3R:22692652-22694630 (+) // 100.0 //
Probeset : 1639087_at
Accessions : protein= NP_524519;, nucleotide= NM_079795;
Pathway : 0000786 // nucleosome // inferred from electronic annotation /// 0000786 // nucleosome // non-traceable author statement
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author stateme
FlyMine data for FBgn0001197.
BDGP gene expression has embryonic in situ data for His2Av: 14 pix of staining in 13 body parts.
BioGrid reports that CG5499 interacts with CG9415 CG9610 .
TRiP has 2 RNAi stocks for FBgn0001197 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001197 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	577 ± 18	4 of 4	0.40	Down
Head	345 ± 23	4 of 4	0.30	Down
Eye	555 ± 19	4 of 4	0.43	Down
Thoracicoabdominal ganglion	372 ± 12	4 of 4	0.30	Down
Salivary gland	242 ± 16	4 of 4	0.19	Down
Crop	272 ± 12	4 of 4	0.20	Down
Midgut	333 ± 13	4 of 4	0.30	Down
Tubule	247 ± 35	4 of 4	0.20	Down
Hindgut	238 ± 10	4 of 4	0.20	Down
Heart	243 ± 3	4 of 4	0.19	Down
Fat body	187 ± 34	4 of 4	0.14	Down
Ovary	2182 ± 16	4 of 4	1.70	Up
Testis	563 ± 9	4 of 4	0.40	Down
Male accessory glands	501 ± 41	4 of 4	0.40	Down
Virgin spermatheca	254 ± 9	4 of 4	0.20	Down
Mated spermatheca	307 ± 23	4 of 4	0.24	Down
Adult carcass	185 ± 17	4 of 4	0.10	Down
Larval CNS	2113 ± 90	4 of 4	1.62	Up
Larval Salivary gland	1670 ± 48	4 of 4	1.28	Up
Larval midgut	199 ± 3	4 of 4	0.15	Down
Larval tubule	188 ± 7	4 of 4	0.10	Down
Larval hindgut	540 ± 13	4 of 4	0.41	Down
Larval fat body	229 ± 14	4 of 4	0.20	Down
Larval trachea	1583 ± 159	4 of 4	1.22	Up
Larval carcass	801 ± 27	4 of 4	0.61	Down
S2 cells (growing)	1517 ± 60	4 of 4	1.16	None
Whole fly	1303 ± 78	4 of 4

Looking for CG5499-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720