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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5499-RA through 18771 annotations produced 1 hits



Histone H2A variant (His2Av):

Annotation Number : CG5499
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001197
Gbrowse : chr3R:22692652-22694630 (+) // 100.0 //
Probeset : 1639087_at
Accessions : protein= NP_524519;, nucleotide= NM_079795;
Pathway : 0000786 // nucleosome // inferred from electronic annotation /// 0000786 // nucleosome // non-traceable author statement
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author stateme
FlyMine data for FBgn0001197.
BDGP gene expression has embryonic in situ data for His2Av: 14 pix of staining in 13 body parts.
BioGrid reports that CG5499 interacts with CG9415 CG9610 .
TRiP has 2 RNAi stocks for FBgn0001197 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001197 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain577 184 of 4 0.40Down
Head345 234 of 4 0.30Down
Eye555 194 of 4 0.43Down
Thoracicoabdominal ganglion372 124 of 4 0.30Down
Salivary gland242 164 of 4 0.19Down
Crop272 124 of 4 0.20Down
Midgut333 134 of 4 0.30Down
Tubule247 354 of 4 0.20Down
Hindgut238 104 of 4 0.20Down
Heart243 34 of 4 0.19Down
Fat body187 344 of 4 0.14Down
Ovary2182 164 of 4 1.70Up
Testis563 94 of 4 0.40Down
Male accessory glands501 414 of 4 0.40Down
Virgin spermatheca254 94 of 4 0.20Down
Mated spermatheca307 234 of 4 0.24Down
Adult carcass185 174 of 4 0.10Down
Larval CNS2113 904 of 4 1.62Up
Larval Salivary gland1670 484 of 4 1.28Up
Larval midgut199 34 of 4 0.15Down
Larval tubule188 74 of 4 0.10Down
Larval hindgut540 134 of 4 0.41Down
Larval fat body229 144 of 4 0.20Down
Larval trachea1583 1594 of 4 1.22Up
Larval carcass801 274 of 4 0.61Down
S2 cells (growing)1517 604 of 4 1.16None
Whole fly1303 784 of 4

Looking for CG5499-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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