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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5500-RA through 18771 annotations produced 1 hits



(CG5500):

Annotation Number : CG5500
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039461
Gbrowse : chr3R:22702354-22706181 (+) // 100.0 //
Probeset : 1625966_at
Accessions : protein= NP_651511;, nucleotide= NM_143254;
FlyMine data for FBgn0039461.
VDRC has 2 RNAi stocks for FBgn0039461 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain174 ± 34 of 4 1.40Up
Head110 ± 64 of 4 0.90None
Eye71 ± 24 of 4 0.57Down
Thoracicoabdominal ganglion112 ± 44 of 4 0.90None
Salivary gland83 ± 44 of 4 0.66Down
Crop79 ± 14 of 4 0.60Down
Midgut55 ± 24 of 4 0.40Down
Tubule87 ± 14 of 4 0.70Down
Hindgut182 ± 24 of 4 1.40Up
Heart112 ± 54 of 4 0.89None
Fat body120 ± 144 of 4 0.95None
Ovary133 ± 34 of 4 1.10None
Testis205 ± 84 of 4 1.60Up
Male accessory glands63 ± 64 of 4 0.50Down
Virgin spermatheca84 ± 34 of 4 0.67Down
Mated spermatheca70 ± 94 of 4 0.56Down
Adult carcass231 ± 104 of 4 1.80Up
Larval CNS86 ± 64 of 4 0.68None
Larval Salivary gland45 ± 34 of 4 0.36Down
Larval midgut49 ± 44 of 4 0.39Down
Larval tubule103 ± 44 of 4 0.80None
Larval hindgut70 ± 44 of 4 0.56Down
Larval fat body70 ± 44 of 4 0.60Down
Larval trachea49 ± 54 of 4 0.39Down
Larval carcass81 ± 74 of 4 0.64Down
S2 cells (growing)129 ± 44 of 4 1.02None
Whole fly126 ± 124 of 4

Looking for CG5500-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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