FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5502-RA through 18771 annotations produced 1 hits

Ribosomal protein L4 (RpL4):

Annotation Number : CG5502
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003279
Gbrowse : chr3R:23748514-23750644 (+) // 100.0 //
Probeset : 1627988_at
Accessions : protein= NP_524538;, nucleotide= NM_079814;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0003279.
BDGP gene expression has embryonic in situ data for RpL1: 4 pix of staining in 1 body parts.
BioGrid reports that CG5502 interacts with CG7347 CG9797 .
VDRC has 3 RNAi stocks for FBgn0003279 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2491 ± 55	4 of 4	0.60	Down
Head	3995 ± 180	4 of 4	1.00	None
Eye	4786 ± 112	4 of 4	1.21	Up
Thoracicoabdominal ganglion	3349 ± 125	4 of 4	0.80	Down
Salivary gland	9251 ± 325	4 of 4	2.33	Up
Crop	5524 ± 253	4 of 4	1.40	Up
Midgut	5030 ± 67	4 of 4	1.30	Up
Tubule	4643 ± 72	4 of 4	1.20	Up
Hindgut	4539 ± 71	4 of 4	1.10	Up
Heart	5316 ± 291	4 of 4	1.34	Up
Fat body	5502 ± 688	4 of 4	1.39	Up
Ovary	3453 ± 34	4 of 4	0.90	Down
Testis	861 ± 44	4 of 4	0.20	Down
Male accessory glands	9219 ± 317	4 of 4	2.30	Up
Virgin spermatheca	5347 ± 164	4 of 4	1.35	Up
Mated spermatheca	5626 ± 191	4 of 4	1.42	Up
Adult carcass	5589 ± 153	4 of 4	1.40	Up
Larval CNS	2743 ± 152	4 of 4	0.69	Down
Larval Salivary gland	7544 ± 320	4 of 4	1.90	Up
Larval midgut	4447 ± 155	4 of 4	1.12	Up
Larval tubule	4178 ± 80	4 of 4	1.10	None
Larval hindgut	4368 ± 31	4 of 4	1.10	Up
Larval fat body	6157 ± 675	4 of 4	1.60	Up
Larval trachea	5592 ± 109	4 of 4	1.41	Up
Larval carcass	4617 ± 333	4 of 4	1.16	None
S2 cells (growing)	4608 ± 75	4 of 4	1.16	Up
Whole fly	3964 ± 111	4 of 4

Looking for CG5502-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720