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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5507-RA through 18771 annotations produced 1 hits



48' transcript (T48):

Annotation Number : CG5507
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004359
Gbrowse : chr3R:22707455-22736719 (+) // 100.0 //
Probeset : 1636245_at
Accessions : protein= NP_524522;, nucleotide= NM_079798;
Pathway : 0016324 // apical plasma membrane // inferred from direct assay
FlyMine data for FBgn0004359.
BDGP gene expression has embryonic in situ data for T48: 2 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0004359 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004359 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 14 of 4 0.80Down
Head86 54 of 4 1.40Up
Eye143 64 of 4 2.39Up
Thoracicoabdominal ganglion56 24 of 4 0.90None
Salivary gland49 44 of 4 0.82None
Crop293 94 of 4 4.90Up
Midgut14 24 of 4 0.20Down
Tubule234 174 of 4 3.90Up
Hindgut69 24 of 4 1.20None
Heart45 24 of 4 0.76Down
Fat body47 34 of 4 0.79Down
Ovary84 14 of 4 1.40Up
Testis26 14 of 4 0.40Down
Male accessory glands29 44 of 4 0.50Down
Virgin spermatheca19 14 of 4 0.33Down
Mated spermatheca21 24 of 4 0.36Down
Adult carcass84 64 of 4 1.40Up
Larval CNS29 24 of 4 0.49Down
Larval Salivary gland22 14 of 4 0.37Down
Larval midgut14 24 of 4 0.24Down
Larval tubule31 24 of 4 0.50Down
Larval hindgut29 14 of 4 0.48Down
Larval fat body29 64 of 4 0.50Down
Larval trachea113 74 of 4 1.89Up
Larval carcass59 44 of 4 0.99None
S2 cells (growing)58 14 of 4 0.96None
Whole fly60 24 of 4

Looking for CG5507-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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