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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5517-RA through 18771 annotations produced 1 hits



Insulin degrading metalloproteinase (Ide):

Annotation Number : CG5517
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001247
Gbrowse : chr3L:20364766-20368995 (-) // 100.0 //
Probeset : 1625496_at
Accessions : protein= NP_524182;, nucleotide= NM_079458;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inf
FlyMine data for FBgn0001247.
VDRC has 3 RNAi stocks for FBgn0001247 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain735 ± 84 of 4 2.60Up
Head429 ± 174 of 4 1.50Up
Eye348 ± 94 of 4 1.25Up
Thoracicoabdominal ganglion811 ± 184 of 4 2.90Up
Salivary gland621 ± 154 of 4 2.24Up
Crop531 ± 44 of 4 1.90Up
Midgut247 ± 44 of 4 0.90Down
Tubule537 ± 124 of 4 1.90Up
Hindgut539 ± 104 of 4 1.90Up
Heart422 ± 94 of 4 1.52Up
Fat body390 ± 334 of 4 1.40Up
Ovary322 ± 74 of 4 1.20Up
Testis265 ± 34 of 4 1.00Down
Male accessory glands327 ± 64 of 4 1.20Up
Virgin spermatheca557 ± 84 of 4 2.01Up
Mated spermatheca546 ± 254 of 4 1.97Up
Adult carcass432 ± 204 of 4 1.60Up
Larval CNS536 ± 424 of 4 1.93Up
Larval Salivary gland489 ± 84 of 4 1.76Up
Larval midgut276 ± 94 of 4 0.99None
Larval tubule534 ± 94 of 4 1.90Up
Larval hindgut337 ± 64 of 4 1.21Up
Larval fat body170 ± 54 of 4 0.60Down
Larval trachea306 ± 104 of 4 1.10Up
Larval carcass392 ± 234 of 4 1.41Up
S2 cells (growing)448 ± 104 of 4 1.61Up
Whole fly278 ± 34 of 4

Looking for CG5517-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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