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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5521-RA through 18771 annotations produced 1 hits



(CG5521):

Annotation Number : CG5521
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039466
Gbrowse : chr3R:22793165-22802267 (+) // 100.0 //
Probeset : 1623121_at
Accessions : protein= NP_001163748; /// NP_651516;, nucleotide= NM_001170277; /// NM_143259;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005096 // GTPase activator activity // inferred from electronic annotation
FlyMine data for FBgn0039466.
Homophila reports that CG5521 is a close match (1e-13) to human gene LAM;TSC2 (NP_001070651), a gene associated with Lymphangioleiomyomatosis, somatic, 606690 (3);Tuberous sclerosis-2, 191100 (3).
VDRC has 2 RNAi stocks for FBgn0039466 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 ± 32 of 4 1.40None
Head14 ± 50 of 4 0.80None
Eye7 ± 20 of 4 0.42Down
Thoracicoabdominal ganglion20 ± 20 of 4 1.10None
Salivary gland9 ± 20 of 4 0.54None
Crop31 ± 32 of 4 1.70Up
Midgut6 ± 40 of 4 0.40None
Tubule3 ± 00 of 4 0.20Down
Hindgut16 ± 20 of 4 0.90None
Heart6 ± 10 of 4 0.38Down
Fat body10 ± 40 of 4 0.56None
Ovary16 ± 12 of 4 0.90None
Testis3 ± 00 of 4 0.20Down
Male accessory glands9 ± 30 of 4 0.50None
Virgin spermatheca1 ± 00 of 4 0.08Down
Mated spermatheca1 ± 00 of 4 0.07Down
Adult carcass6 ± 20 of 4 0.40Down
Larval CNS15 ± 50 of 4 0.83None
Larval Salivary gland20 ± 32 of 4 1.11None
Larval midgut8 ± 30 of 4 0.48None
Larval tubule26 ± 10 of 4 1.50Up
Larval hindgut20 ± 10 of 4 1.14None
Larval fat body5 ± 20 of 4 0.30Down
Larval trachea10 ± 31 of 4 0.60None
Larval carcass14 ± 20 of 4 0.80None
S2 cells (growing)44 ± 14 of 4 2.42Up
Whole fly18 ± 20 of 4

Looking for CG5521-RA. 1 entries matched from 18771, in 3 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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