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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5525-RA through 18771 annotations produced 1 hits



(CG5525):

Annotation Number : CG5525
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032444
Gbrowse : chr2L:12690324-12692937 (-) // 100.0 //
Probeset : 1629752_at
Accessions : protein= NP_609579;, nucleotide= NM_135735;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from el
FlyMine data for FBgn0032444.
BDGP gene expression has embryonic in situ data for CG5525: 15 pix of staining in 18 body parts.
Homophila reports that CG5525 is a close match (6e-85) to human gene CCT5;CCTE;KIAA0098 (NP_036205), a gene associated with Neuropathy, hereditary sensory, with spastic paraplegia, 256840 (3).
BioGrid reports that CG5525 interacts with CG9572 .
VDRC has 3 RNAi stocks for FBgn0032444 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain214 ± 134 of 4 0.30Down
Head228 ± 134 of 4 0.30Down
Eye161 ± 84 of 4 0.22Down
Thoracicoabdominal ganglion230 ± 44 of 4 0.30Down
Salivary gland211 ± 134 of 4 0.29Down
Crop520 ± 194 of 4 0.70Down
Midgut494 ± 294 of 4 0.70Down
Tubule582 ± 384 of 4 0.80Down
Hindgut507 ± 144 of 4 0.70Down
Heart232 ± 74 of 4 0.32Down
Fat body296 ± 254 of 4 0.41Down
Ovary1063 ± 194 of 4 1.50Up
Testis276 ± 54 of 4 0.40Down
Male accessory glands387 ± 374 of 4 0.50Down
Virgin spermatheca320 ± 194 of 4 0.44Down
Mated spermatheca482 ± 184 of 4 0.66Down
Adult carcass222 ± 154 of 4 0.30Down
Larval CNS944 ± 114 of 4 1.29Up
Larval Salivary gland694 ± 304 of 4 0.95None
Larval midgut456 ± 424 of 4 0.63Down
Larval tubule341 ± 124 of 4 0.50Down
Larval hindgut810 ± 624 of 4 1.11None
Larval fat body245 ± 194 of 4 0.30Down
Larval trachea870 ± 1184 of 4 1.19None
Larval carcass780 ± 474 of 4 1.07None
S2 cells (growing)960 ± 164 of 4 1.31Up
Whole fly730 ± 324 of 4

Looking for CG5525-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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