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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5535-RA through 18771 annotations produced 1 hits



(CG5535):

Annotation Number : CG5535
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036764
Gbrowse : chr3L:17845723-17849864 (-) // 100.0 //
Probeset : 1627343_a_at
Accessions : protein= NP_649019; /// NP_730312;, nucleotide= NM_140762; /// NM_168753;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity /// 0015171
FlyMine data for FBgn0036764.
VDRC has 3 RNAi stocks for FBgn0036764 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain33 14 of 4 0.20Down
Head62 144 of 4 0.30Down
Eye160 174 of 4 0.78None
Thoracicoabdominal ganglion35 24 of 4 0.20Down
Salivary gland119 74 of 4 0.58Down
Crop33 04 of 4 0.20Down
Midgut71 74 of 4 0.30Down
Tubule92 124 of 4 0.50Down
Hindgut1330 584 of 4 6.50Up
Heart24 24 of 4 0.12Down
Fat body8 92 of 4 0.04Down
Ovary307 74 of 4 1.50Up
Testis29 14 of 4 0.10Down
Male accessory glands338 194 of 4 1.70Up
Virgin spermatheca39 34 of 4 0.20Down
Mated spermatheca46 24 of 4 0.23Down
Adult carcass23 44 of 4 0.10Down
Larval CNS279 314 of 4 1.37Up
Larval Salivary gland128 74 of 4 0.63Down
Larval midgut70 94 of 4 0.34Down
Larval tubule36 14 of 4 0.20Down
Larval hindgut223 204 of 4 1.09None
Larval fat body21 24 of 4 0.10Down
Larval trachea118 114 of 4 0.58Down
Larval carcass121 154 of 4 0.60Down
S2 cells (growing)555 114 of 4 2.72Up
Whole fly204 134 of 4

Looking for CG5535-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime