FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5540-RA through 18771 annotations produced 1 hits

Odorant receptor 98a (Or98a):

Annotation Number : CG5540
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039551
Gbrowse : chr3R:23671671-23672982 (+) // 100.0 //
Probeset : 1635599_at
Accessions : protein= NP_524536;, nucleotide= NM_079812;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0039551.
VDRC has 2 RNAi stocks for FBgn0039551 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.70	None
Head	7 ± 0	3 of 4	5.80	Up
Eye	3 ± 0	0 of 4	2.65	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.60	None
Salivary gland	8 ± 1	0 of 4	6.43	Up
Crop	2 ± 0	0 of 4	1.40	None
Midgut	2 ± 1	0 of 4	1.60	None
Tubule	2 ± 0	0 of 4	1.90	Up
Hindgut	0 ± 0	0 of 4	0.70	None
Heart	2 ± 1	0 of 4	1.61	None
Fat body	2 ± 1	0 of 4	1.94	None
Ovary	1 ± 0	0 of 4	0.90	None
Testis	2 ± 0	0 of 4	1.70	None
Male accessory glands	3 ± 1	0 of 4	2.60	None
Virgin spermatheca	1 ± 0	0 of 4	0.93	None
Mated spermatheca	2 ± 1	0 of 4	2.00	None
Adult carcass	2 ± 2	0 of 4	2.10	None
Larval CNS	2 ± 1	0 of 4	1.54	None
Larval Salivary gland	2 ± 1	0 of 4	2.00	None
Larval midgut	3 ± 1	0 of 4	2.30	None
Larval tubule	1 ± 0	0 of 4	1.00	None
Larval hindgut	2 ± 0	0 of 4	2.02	None
Larval fat body	6 ± 0	1 of 4	4.60	Up
Larval trachea	1 ± 0	0 of 4	0.98	None
Larval carcass	1 ± 0	0 of 4	1.28	None
S2 cells (growing)	1 ± 0	0 of 4	0.76	None
Whole fly	1 ± 0	0 of 4

Looking for CG5540-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720