FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5546-RA through 18771 annotations produced 1 hits

Mediator complex subunit 19 (MED19):

Annotation Number : CG5546
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036761
Gbrowse : chr3L:17836905-17839600 (-) // 100.0 //
Probeset : 1640637_at
Accessions : protein= NP_649016;, nucleotide= NM_140759;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0016592 // mediator complex // inferred from electronic an
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016455 // RNA polymerase II transcription mediator
FlyMine data for FBgn0036761.
BioGrid reports that CG5546 interacts with CG8368 CG5792 CG7283 CG7424 CG7757 CG8620 .
TRiP has 2 RNAi stocks for FBgn0036761 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036761 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	164 ± 2	4 of 4	0.90	None
Head	70 ± 2	4 of 4	0.40	Down
Eye	66 ± 4	4 of 4	0.38	Down
Thoracicoabdominal ganglion	144 ± 2	4 of 4	0.80	None
Salivary gland	124 ± 8	4 of 4	0.70	Down
Crop	92 ± 5	4 of 4	0.50	Down
Midgut	69 ± 2	4 of 4	0.40	Down
Tubule	94 ± 3	4 of 4	0.50	Down
Hindgut	79 ± 3	4 of 4	0.40	Down
Heart	57 ± 2	4 of 4	0.32	Down
Fat body	60 ± 4	4 of 4	0.34	Down
Ovary	373 ± 6	4 of 4	2.10	Up
Testis	160 ± 7	4 of 4	0.90	None
Male accessory glands	79 ± 3	4 of 4	0.40	Down
Virgin spermatheca	63 ± 2	4 of 4	0.36	Down
Mated spermatheca	56 ± 4	4 of 4	0.32	Down
Adult carcass	73 ± 2	4 of 4	0.40	Down
Larval CNS	228 ± 21	4 of 4	1.29	Up
Larval Salivary gland	141 ± 5	4 of 4	0.80	None
Larval midgut	81 ± 2	4 of 4	0.46	Down
Larval tubule	105 ± 2	4 of 4	0.60	Down
Larval hindgut	97 ± 4	4 of 4	0.55	Down
Larval fat body	98 ± 4	4 of 4	0.60	Down
Larval trachea	112 ± 3	4 of 4	0.64	Down
Larval carcass	173 ± 38	4 of 4	0.98	None
S2 cells (growing)	212 ± 4	4 of 4	1.20	None
Whole fly	176 ± 12	4 of 4

Looking for CG5546-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720