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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5546-RA through 18771 annotations produced 1 hits



Mediator complex subunit 19 (MED19):

Annotation Number : CG5546
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036761
Gbrowse : chr3L:17836905-17839600 (-) // 100.0 //
Probeset : 1640637_at
Accessions : protein= NP_649016;, nucleotide= NM_140759;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0016592 // mediator complex // inferred from electronic an
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016455 // RNA polymerase II transcription mediator
FlyMine data for FBgn0036761.
BioGrid reports that CG5546 interacts with CG8368 CG5792 CG7283 CG7424 CG7757 CG8620 .
TRiP has 2 RNAi stocks for FBgn0036761 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036761 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain164 24 of 4 0.90None
Head70 24 of 4 0.40Down
Eye66 44 of 4 0.38Down
Thoracicoabdominal ganglion144 24 of 4 0.80None
Salivary gland124 84 of 4 0.70Down
Crop92 54 of 4 0.50Down
Midgut69 24 of 4 0.40Down
Tubule94 34 of 4 0.50Down
Hindgut79 34 of 4 0.40Down
Heart57 24 of 4 0.32Down
Fat body60 44 of 4 0.34Down
Ovary373 64 of 4 2.10Up
Testis160 74 of 4 0.90None
Male accessory glands79 34 of 4 0.40Down
Virgin spermatheca63 24 of 4 0.36Down
Mated spermatheca56 44 of 4 0.32Down
Adult carcass73 24 of 4 0.40Down
Larval CNS228 214 of 4 1.29Up
Larval Salivary gland141 54 of 4 0.80None
Larval midgut81 24 of 4 0.46Down
Larval tubule105 24 of 4 0.60Down
Larval hindgut97 44 of 4 0.55Down
Larval fat body98 44 of 4 0.60Down
Larval trachea112 34 of 4 0.64Down
Larval carcass173 384 of 4 0.98None
S2 cells (growing)212 44 of 4 1.20None
Whole fly176 124 of 4

Looking for CG5546-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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