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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5547-RB through 18771 annotations produced 1 hits



Phosphoethanolamine cytidylyltransferase (Pect):

Annotation Number : CG5547
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032482
Gbrowse : chr2L:13203767-13210848 (+) // 100.0 //
Probeset : 1641183_a_at
Accessions : protein= NP_609613; /// NP_723789; /// NP_723790; /// NP_723791;, nucleotide= NM_135769; /// NM_165028; /// NM_165029; /// NM_165030;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004306 // ethanolamine-phosphate cytidylyltran
FlyMine data for FBgn0032482.
BioGrid reports that CG5547 interacts with CG8268 CG8680 .
VDRC has 3 RNAi stocks for FBgn0032482 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1067 ± 124 of 4 1.40Up
Head1118 ± 354 of 4 1.50Up
Eye908 ± 414 of 4 1.18None
Thoracicoabdominal ganglion1409 ± 204 of 4 1.80Up
Salivary gland2116 ± 714 of 4 2.75Up
Crop987 ± 214 of 4 1.30Up
Midgut317 ± 64 of 4 0.40Down
Tubule476 ± 184 of 4 0.60Down
Hindgut893 ± 154 of 4 1.20None
Heart1768 ± 584 of 4 2.30Up
Fat body2509 ± 614 of 4 3.26Up
Ovary612 ± 44 of 4 0.80Down
Testis1539 ± 214 of 4 2.00Up
Male accessory glands2419 ± 1374 of 4 3.10Up
Virgin spermatheca3483 ± 2294 of 4 4.52Up
Mated spermatheca3265 ± 1294 of 4 4.24Up
Adult carcass1553 ± 894 of 4 2.00Up
Larval CNS734 ± 454 of 4 0.95None
Larval Salivary gland81 ± 94 of 4 0.11Down
Larval midgut478 ± 364 of 4 0.62Down
Larval tubule234 ± 124 of 4 0.30Down
Larval hindgut785 ± 324 of 4 1.02None
Larval fat body2641 ± 1834 of 4 3.40Up
Larval trachea422 ± 544 of 4 0.55Down
Larval carcass395 ± 94 of 4 0.51Down
S2 cells (growing)1818 ± 464 of 4 2.36Up
Whole fly770 ± 464 of 4

Looking for CG5547-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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