Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG5550-RA through 18771 annotations produced 1 hits


Fibrinogen-like (CG5550):

Annotation Number : CG5550
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034160
Gbrowse : chr2R:12704095-12705086 (+) // 100.0 //
Probeset : 1629201_at
Accessions : protein= NP_611160;, nucleotide= NM_137316;
Pathway : 0005578 // proteinaceous extracellular matrix // inferred from sequence or structural similarity /// 0005615 // extracel
Interpro : 0005102 // receptor binding // inferred from electronic annotation
FlyMine data for FBgn0034160.
Homophila reports that CG5550 is a close match (7e-22) to human gene FGG (NP_000500), a gene associated with Dysfibrinogenemia, gamma type (3);Hypofibrinogenemia, gamma type (3);Thrombophilia, dysfibrinogenemic (3).
VDRC has 3 RNAi stocks for FBgn0034160 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.00Down
Eye2 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion3 ± 21 of 4 0.00Down
Salivary gland17 ± 20 of 4 0.12Down
Crop5 ± 20 of 4 0.00Down
Midgut1628 ± 1214 of 411.10Up
Tubule3 ± 00 of 4 0.00Down
Hindgut76 ± 104 of 4 0.50Down
Heart1 ± 10 of 4 0.01Down
Fat body5 ± 21 of 4 0.04Down
Ovary2 ± 10 of 4 0.00Down
Testis5 ± 11 of 4 0.00Down
Male accessory glands8 ± 00 of 4 0.10Down
Virgin spermatheca5 ± 11 of 4 0.04Down
Mated spermatheca7 ± 10 of 4 0.05Down
Adult carcass8 ± 30 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.01Down
Larval Salivary gland12 ± 32 of 4 0.08Down
Larval midgut2394 ± 5064 of 416.26Up
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut7 ± 22 of 4 0.05Down
Larval fat body4 ± 20 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.01Down
Larval carcass6 ± 01 of 4 0.04Down
S2 cells (growing)2 ± 00 of 4 0.02Down
Whole fly147 ± 154 of 4

Looking for CG5550-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime