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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5558-RA through 18771 annotations produced 1 hits



(CG42358):

Annotation Number : CG5558
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259704
Gbrowse : chr3R:14985820-14988000 (-) // 100.0 //
Probeset : 1641745_a_at
Accessions : protein= NP_650787;, nucleotide= NM_142530;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0259704.
BioGrid reports that CG5558 interacts with CG8863 .
TRiP has 2 RNAi stocks for FBgn0259704 available for purchase.
VDRC has 4 RNAi stocks for FBgn0259704 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain108 34 of 4 0.70Down
Head77 14 of 4 0.50Down
Eye94 34 of 4 0.57Down
Thoracicoabdominal ganglion106 24 of 4 0.60Down
Salivary gland130 114 of 4 0.78Down
Crop106 54 of 4 0.60Down
Midgut88 44 of 4 0.50Down
Tubule134 74 of 4 0.80Down
Hindgut107 14 of 4 0.60Down
Heart85 44 of 4 0.51Down
Fat body82 34 of 4 0.50Down
Ovary270 14 of 4 1.60Up
Testis268 84 of 4 1.60Up
Male accessory glands82 34 of 4 0.50Down
Virgin spermatheca82 34 of 4 0.49Down
Mated spermatheca108 74 of 4 0.65Down
Adult carcass67 64 of 4 0.40Down
Larval CNS217 124 of 4 1.31Up
Larval Salivary gland117 74 of 4 0.71Down
Larval midgut72 34 of 4 0.43Down
Larval tubule111 34 of 4 0.70Down
Larval hindgut120 74 of 4 0.72Down
Larval fat body131 24 of 4 0.80Down
Larval trachea218 164 of 4 1.31Up
Larval carcass125 94 of 4 0.75Down
S2 cells (growing)132 14 of 4 0.79Down
Whole fly166 84 of 4

Looking for CG5558-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime