Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5560-RA through 18771 annotations produced 1 hits



CG5560 (dob):

Annotation Number : CG5560
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030607
Gbrowse : chrX:14961035-14963124 (+) // 100.0 //
Probeset : 1631173_at
Accessions : protein= NP_572995;, nucleotide= NM_132767;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0030607.
Homophila reports that CG5560 is a close match (9e-53) to human gene ATGL;PNPLA2;TTS2 (NP_065109), a gene associated with Neutral lipid storage disease with myopathy, 610717 (3).
VDRC has 2 RNAi stocks for FBgn0030607 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.10Down
Head134 ± 144 of 4 1.00None
Eye61 ± 114 of 4 0.47Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland12 ± 10 of 4 0.09Down
Crop27 ± 34 of 4 0.20Down
Midgut1 ± 00 of 4 0.00Down
Tubule19 ± 32 of 4 0.20Down
Hindgut35 ± 23 of 4 0.30Down
Heart312 ± 154 of 4 2.37Up
Fat body796 ± 824 of 4 6.06Up
Ovary218 ± 54 of 4 1.70Up
Testis23 ± 14 of 4 0.20Down
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca1028 ± 304 of 4 7.82Up
Mated spermatheca590 ± 744 of 4 4.49Up
Adult carcass296 ± 164 of 4 2.30Up
Larval CNS19 ± 14 of 4 0.15Down
Larval Salivary gland11 ± 20 of 4 0.09Down
Larval midgut4 ± 10 of 4 0.03Down
Larval tubule7 ± 20 of 4 0.10Down
Larval hindgut6 ± 11 of 4 0.05Down
Larval fat body278 ± 264 of 4 2.10Up
Larval trachea13 ± 71 of 4 0.10Down
Larval carcass11 ± 10 of 4 0.09Down
S2 cells (growing)44 ± 14 of 4 0.33Down
Whole fly131 ± 64 of 4

Looking for CG5560-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime