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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG5575-RA through 18771 annotations produced 1 hits

ken barbie (ken):

Annotation Number : CG5575
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011236
Gbrowse : chr2R:19757797-19764965 (+) // 100.0 //
Probeset : 1628840_at
Accessions : protein= NP_523833;, nucleotide= NM_079109;
Pathway : DNA-dependent // inferred from mutant phenotype /// 0006911 // phagocytosis
Interpro : engulfment // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from elect
FlyMine data for FBgn0011236.
BDGP gene expression has embryonic in situ data for ken: 29 pix of staining in 20 body parts.
Homophila reports that CG5575 is a close match (9e-12) to human gene ZBTB16;ZNF145;PLZF (NP_005997), a gene associated with Leukemia, acute promyelocytic, PL2F/RARA type (3).
BioGrid reports that CG5575 interacts with CG5738 .
TRiP has 1 RNAi stocks for FBgn0011236 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011236 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 14 of 4 0.30Down
Head97 64 of 4 0.70Down
Eye95 14 of 4 0.64Down
Thoracicoabdominal ganglion49 24 of 4 0.30Down
Salivary gland188 204 of 4 1.27None
Crop137 84 of 4 0.90None
Midgut60 14 of 4 0.40Down
Tubule116 44 of 4 0.80Down
Hindgut108 24 of 4 0.70Down
Heart81 54 of 4 0.55Down
Fat body83 84 of 4 0.56Down
Ovary405 114 of 4 2.70Up
Testis97 24 of 4 0.70Down
Male accessory glands82 84 of 4 0.60Down
Virgin spermatheca111 54 of 4 0.75Down
Mated spermatheca125 84 of 4 0.84None
Adult carcass101 44 of 4 0.70Down
Larval CNS99 84 of 4 0.67Down
Larval Salivary gland119 84 of 4 0.80None
Larval midgut40 24 of 4 0.27Down
Larval tubule15 14 of 4 0.10Down
Larval hindgut79 64 of 4 0.54Down
Larval fat body23 73 of 4 0.20Down
Larval trachea204 234 of 4 1.38Up
Larval carcass151 54 of 4 1.02None
S2 cells (growing)380 64 of 4 2.56Up
Whole fly148 114 of 4

Looking for CG5575-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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