FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5588-RC through 18771 annotations produced 1 hits

Mtl(Rac-like) (Mtl):

Annotation Number : CG5588
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039532
Gbrowse : chr3R:23462133-23465005 (+) // 100.0 //
Probeset : 1629644_s_at
Accessions : protein= NP_524533; /// NP_733222; /// NP_733223;, nucleotide= NM_079809; /// NM_170343; /// NM_170344;
Pathway : elongation of leading edge cells // inferred from mutant phenotype /// 0007435 // salivary gland morphogenesis // infer
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic anno
FlyMine data for FBgn0039532.
BDGP gene expression has embryonic in situ data for Mtl: 11 pix of staining in 12 body parts.
Homophila reports that CG5588 is a close match (5e-11) to human gene GS2;RAB27A;RAM (NP_899059), a gene associated with Griscelli syndrome, type 2, 607624 (3).
BioGrid reports that CG5588 interacts with CG2248 CG2248 CG8556 CG8556 CG18214 CG18214 .
TRiP has 2 RNAi stocks for FBgn0039532 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039532 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	128 ± 1	4 of 4	0.70	Down
Head	67 ± 9	4 of 4	0.30	Down
Eye	47 ± 2	4 of 4	0.24	Down
Thoracicoabdominal ganglion	84 ± 8	4 of 4	0.40	Down
Salivary gland	79 ± 3	0 of 4	0.40	Down
Crop	122 ± 2	4 of 4	0.60	Down
Midgut	57 ± 1	3 of 4	0.30	Down
Tubule	17 ± 1	0 of 4	0.10	Down
Hindgut	71 ± 4	4 of 4	0.40	Down
Heart	55 ± 2	4 of 4	0.28	Down
Fat body	46 ± 5	4 of 4	0.23	Down
Ovary	343 ± 13	4 of 4	1.70	Up
Testis	534 ± 23	4 of 4	2.70	Up
Male accessory glands	66 ± 4	0 of 4	0.30	Down
Virgin spermatheca	26 ± 3	4 of 4	0.13	Down
Mated spermatheca	30 ± 3	3 of 4	0.15	Down
Adult carcass	60 ± 3	4 of 4	0.30	Down
Larval CNS	169 ± 15	4 of 4	0.85	None
Larval Salivary gland	74 ± 3	4 of 4	0.38	Down
Larval midgut	59 ± 4	0 of 4	0.30	Down
Larval tubule	66 ± 6	4 of 4	0.30	Down
Larval hindgut	89 ± 1	4 of 4	0.45	Down
Larval fat body	176 ± 26	4 of 4	0.90	None
Larval trachea	82 ± 10	4 of 4	0.42	Down
Larval carcass	107 ± 9	4 of 4	0.54	Down
S2 cells (growing)	130 ± 4	4 of 4	0.66	Down
Whole fly	197 ± 14	4 of 4

Looking for CG5588-RC. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720