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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5592-RA through 18771 annotations produced 1 hits



(CG5592):

Annotation Number : CG5592
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035645
Gbrowse : chr3L:5890747-5892495 (+) // 100.0 //
Probeset : 1637922_at
Accessions : protein= NP_647996;, nucleotide= NM_139739;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008513 // secondary active organic cation tr
FlyMine data for FBgn0035645.
Homophila reports that CG5592 is a close match (1e-20) to human gene OAT4L;SLC22A12;URAT1 (NP_700357), a gene associated with Hypouricemia, renal, 220150 (3).
VDRC has 1 RNAi stocks for FBgn0035645 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.50None
Head1 ± 00 of 4 0.50None
Eye2 ± 00 of 4 0.60None
Thoracicoabdominal ganglion2 ± 10 of 4 0.70None
Salivary gland2 ± 00 of 4 0.60None
Crop0 ± 00 of 4 0.20None
Midgut1 ± 00 of 4 0.50None
Tubule1 ± 00 of 4 0.50Down
Hindgut3 ± 20 of 4 0.90None
Heart1 ± 00 of 4 0.41None
Fat body1 ± 00 of 4 0.34None
Ovary2 ± 00 of 4 0.70None
Testis57 ± 44 of 417.10Up
Male accessory glands3 ± 10 of 4 1.10None
Virgin spermatheca1 ± 00 of 4 0.51None
Mated spermatheca1 ± 00 of 4 0.34None
Adult carcass1 ± 00 of 4 0.30None
Larval CNS1 ± 20 of 4 0.53None
Larval Salivary gland1 ± 00 of 4 0.58None
Larval midgut0 ± 00 of 4 0.18None
Larval tubule1 ± 00 of 4 0.50None
Larval hindgut0 ± 00 of 4 0.24None
Larval fat body9 ± 31 of 4 2.90None
Larval trachea1 ± 10 of 4 0.38None
Larval carcass0 ± 00 of 4 0.22None
S2 cells (growing)4 ± 00 of 4 1.26None
Whole fly3 ± 10 of 4

Looking for CG5592-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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