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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5599-RA through 18771 annotations produced 1 hits



(CG5599):

Annotation Number : CG5599
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030612
Gbrowse : chrX:14980170-14982665 (+) // 100.0 //
Probeset : 1625125_at
Accessions : protein= NP_573000;, nucleotide= NM_132772;
Pathway : engulfment // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation //
Interpro : 0009353 // mitochondrial oxoglutarate dehydrogenase complex // inferred from sequence or structural similarity
FlyMine data for FBgn0030612.
BDGP gene expression has embryonic in situ data for CG5599: 4 pix of staining in 1 body parts.
Homophila reports that CG5599 is a close match (1e-25) to human gene PDX1 (NP_003468), a gene associated with Lacticacidemia due to PDX1 deficiency, 245349 (3).
BioGrid reports that CG5599 interacts with CG8529 .
TRiP has 1 RNAi stocks for FBgn0030612 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030612 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 14 of 4 0.30Down
Head133 24 of 4 1.00None
Eye54 74 of 4 0.39Down
Thoracicoabdominal ganglion49 34 of 4 0.40Down
Salivary gland159 24 of 4 1.15Up
Crop104 54 of 4 0.80Down
Midgut141 74 of 4 1.00None
Tubule380 154 of 4 2.70Up
Hindgut109 74 of 4 0.80Down
Heart233 184 of 4 1.68Up
Fat body324 204 of 4 2.34Up
Ovary244 24 of 4 1.80Up
Testis20 11 of 4 0.10Down
Male accessory glands33 12 of 4 0.20Down
Virgin spermatheca157 24 of 4 1.14None
Mated spermatheca128 94 of 4 0.92None
Adult carcass239 74 of 4 1.70Up
Larval CNS69 84 of 4 0.50Down
Larval Salivary gland185 234 of 4 1.34None
Larval midgut168 234 of 4 1.22None
Larval tubule50 24 of 4 0.40Down
Larval hindgut241 284 of 4 1.74Up
Larval fat body23 60 of 4 0.20Down
Larval trachea128 154 of 4 0.92None
Larval carcass177 284 of 4 1.28None
S2 cells (growing)59 34 of 4 0.43Down
Whole fly138 64 of 4

Looking for CG5599-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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