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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5618-RA through 18771 annotations produced 1 hits



(CG5618):

Annotation Number : CG5618
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036975
Gbrowse : chr3L:20347051-20349735 (+) // 100.0 //
Probeset : 1623238_at
Accessions : protein= NP_001137987; /// NP_649211;, nucleotide= NM_001144515; /// NM_140954;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004782 // sulfinoalanine decarboxylase activit
FlyMine data for FBgn0036975.
BDGP gene expression has embryonic in situ data for CG5618: 18 pix of staining in 6 body parts.
Homophila reports that CG5618 is a close match (3e-18) to human gene DDC (NP_001076440), a gene associated with Aromatic L-amino acid decarboxylase deficiency, 608643 (3).
BioGrid reports that CG5618 interacts with CG6105 .
TRiP has 1 RNAi stocks for FBgn0036975 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain147 24 of 4 0.90None
Head684 304 of 4 4.10Up
Eye263 504 of 4 1.58None
Thoracicoabdominal ganglion127 54 of 4 0.80Down
Salivary gland73 54 of 4 0.44Down
Crop119 34 of 4 0.70Down
Midgut794 274 of 4 4.80Up
Tubule720 844 of 4 4.30Up
Hindgut147 44 of 4 0.90None
Heart332 24 of 4 1.99Up
Fat body540 1134 of 4 3.23Up
Ovary10 00 of 4 0.10Down
Testis14 24 of 4 0.10Down
Male accessory glands54 14 of 4 0.30Down
Virgin spermatheca621 584 of 4 3.72Up
Mated spermatheca903 1614 of 4 5.41Up
Adult carcass546 444 of 4 3.30Up
Larval CNS41 104 of 4 0.25Down
Larval Salivary gland82 54 of 4 0.49Down
Larval midgut504 74 of 4 3.02Up
Larval tubule345 154 of 4 2.10Up
Larval hindgut114 94 of 4 0.69Down
Larval fat body1996 3514 of 411.90Up
Larval trachea91 104 of 4 0.55Down
Larval carcass62 94 of 4 0.37Down
S2 cells (growing)62 24 of 4 0.37Down
Whole fly167 94 of 4

Looking for CG5618-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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