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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5634-RA through 18771 annotations produced 1 hits



distracted (dsd):

Annotation Number : CG5634
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039528
Gbrowse : chr3R:23423480-23433079 (-) // 100.0 //
Probeset : 1630639_at
Accessions : protein= NP_651571;, nucleotide= NM_143314;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0039528.
Homophila reports that CG5634 is a close match (4e-11) to human gene LAMA3;LOCS (NP_937762), a gene associated with Epidermolysis bullosa, generalized atrophic benign, 226650 (3);Epidermolysis bullosa, junctional, Herlitz type, 226700 (3);Laryngoonychocutaneous syndrome, 245660 (3).
BioGrid reports that CG5634 interacts with CG7231 .
VDRC has 7 RNAi stocks for FBgn0039528 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain366 ± 74 of 4 2.70Up
Head195 ± 144 of 4 1.50Up
Eye402 ± 284 of 4 3.01Up
Thoracicoabdominal ganglion427 ± 134 of 4 3.20Up
Salivary gland306 ± 84 of 4 2.29Up
Crop183 ± 34 of 4 1.40Up
Midgut403 ± 94 of 4 3.00Up
Tubule331 ± 214 of 4 2.50Up
Hindgut198 ± 64 of 4 1.50Up
Heart195 ± 104 of 4 1.46Up
Fat body110 ± 124 of 4 0.82Down
Ovary167 ± 24 of 4 1.30Up
Testis26 ± 24 of 4 0.20Down
Male accessory glands158 ± 114 of 4 1.20None
Virgin spermatheca291 ± 234 of 4 2.18Up
Mated spermatheca320 ± 234 of 4 2.40Up
Adult carcass132 ± 34 of 4 1.00None
Larval CNS231 ± 164 of 4 1.73Up
Larval Salivary gland181 ± 34 of 4 1.36Up
Larval midgut310 ± 104 of 4 2.32Up
Larval tubule351 ± 174 of 4 2.60Up
Larval hindgut204 ± 64 of 4 1.53Up
Larval fat body78 ± 84 of 4 0.60Down
Larval trachea190 ± 94 of 4 1.42Up
Larval carcass231 ± 404 of 4 1.73None
S2 cells (growing)257 ± 44 of 4 1.92Up
Whole fly133 ± 54 of 4

Looking for CG5634-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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