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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5639-RA through 18771 annotations produced 1 hits



N-like (CG5639):

Annotation Number : CG5639
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039527
Gbrowse : chr3R:23412094-23419260 (-) // 100.0 //
Probeset : 1630064_at
Accessions : protein= NP_651570;, nucleotide= NM_143313;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0004857 // enzyme inhibitor activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inh
FlyMine data for FBgn0039527.
VDRC has 2 RNAi stocks for FBgn0039527 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head16 ± 22 of 4 0.60Down
Eye51 ± 04 of 4 2.02Up
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland9 ± 30 of 4 0.38Down
Crop87 ± 54 of 4 3.40Up
Midgut18 ± 21 of 4 0.70None
Tubule10 ± 20 of 4 0.40Down
Hindgut463 ± 104 of 418.20Up
Heart8 ± 22 of 4 0.33Down
Fat body8 ± 50 of 4 0.32Down
Ovary1 ± 00 of 4 0.10Down
Testis7 ± 10 of 4 0.30Down
Male accessory glands4 ± 00 of 4 0.20Down
Virgin spermatheca23 ± 21 of 4 0.94None
Mated spermatheca43 ± 34 of 4 1.72Up
Adult carcass13 ± 30 of 4 0.50Down
Larval CNS1 ± 00 of 4 0.06Down
Larval Salivary gland12 ± 00 of 4 0.48Down
Larval midgut21 ± 30 of 4 0.86None
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut150 ± 174 of 4 5.91Up
Larval fat body3 ± 20 of 4 0.10Down
Larval trachea153 ± 424 of 4 6.04Up
Larval carcass205 ± 134 of 4 8.07Up
S2 cells (growing)1 ± 00 of 4 0.07Down
Whole fly25 ± 14 of 4

Looking for CG5639-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime