FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5643-RB through 18771 annotations produced 2 hits

widerborst (wdb):

Annotation Number : CG5643
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027492
Gbrowse : chr3R:23390763-23407961 (-) // 99.88 //
Probeset : 1626385_s_at
Accessions : protein= NP_651569; /// NP_733215; /// NP_733216; /// NP_733217; /// NP_733218;, nucleotide= NM_143312; /// NM_170336; /// NM_170337; /// NM_170338; /// NM_170339;
Pathway : 0000159 // protein phosphatase type 2A complex // inferred from sequence or structural similarity /// 0000159 // protein
Interpro : 0004722 // protein serine/threonine phosphatase activity // inferred from sequence or structural similarity /// 0005488
FlyMine data for FBgn0027492.
BioGrid reports that CG5643 interacts with CG6424 CG8617 CG9948 CG9967 CG6163 CG6215 CG6315 CG6543 CG7602 CG7109 .
TRiP has 3 RNAi stocks for FBgn0027492 available for purchase.
VDRC has 2 RNAi stocks for FBgn0027492 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	77 ± 3	4 of 4	0.40	Down
Head	73 ± 5	4 of 4	0.30	Down
Eye	48 ± 4	4 of 4	0.23	Down
Thoracicoabdominal ganglion	47 ± 2	4 of 4	0.20	Down
Salivary gland	84 ± 5	4 of 4	0.40	Down
Crop	109 ± 6	4 of 4	0.50	Down
Midgut	80 ± 1	4 of 4	0.40	Down
Tubule	159 ± 5	4 of 4	0.80	Down
Hindgut	143 ± 7	4 of 4	0.70	Down
Heart	92 ± 4	4 of 4	0.44	Down
Fat body	126 ± 13	4 of 4	0.60	Down
Ovary	461 ± 7	4 of 4	2.20	Up
Testis	34 ± 1	4 of 4	0.20	Down
Male accessory glands	58 ± 2	4 of 4	0.30	Down
Virgin spermatheca	106 ± 7	4 of 4	0.50	Down
Mated spermatheca	98 ± 5	4 of 4	0.47	Down
Adult carcass	115 ± 4	4 of 4	0.50	Down
Larval CNS	80 ± 4	4 of 4	0.38	Down
Larval Salivary gland	122 ± 3	4 of 4	0.58	Down
Larval midgut	182 ± 15	4 of 4	0.86	None
Larval tubule	168 ± 8	4 of 4	0.80	Down
Larval hindgut	114 ± 4	4 of 4	0.54	Down
Larval fat body	64 ± 3	4 of 4	0.30	Down
Larval trachea	103 ± 15	4 of 4	0.49	Down
Larval carcass	164 ± 10	4 of 4	0.78	Down
S2 cells (growing)	172 ± 4	4 of 4	0.82	Down
Whole fly	210 ± 11	4 of 4

widerborst (wdb):

Annotation Number : S.C3R003171
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027492
Gbrowse : chr3R:23393389-23393788 (-) // 94.77 //
Probeset : 1629187_s_at
Accessions : protein= NP_651569; /// NP_733215; /// NP_733216; /// NP_733217; /// NP_733218;, nucleotide= NM_143312; /// NM_170336; /// NM_170337; /// NM_170338; /// NM_170339;
Pathway : 0000159 // protein phosphatase type 2A complex // inferred from sequence or structural similarity /// 0000159 // protein
Interpro : 0004722 // protein serine/threonine phosphatase activity // inferred from sequence or structural similarity /// 0005488
FlyMine data for FBgn0027492.
TRiP has 3 RNAi stocks for FBgn0027492 available for purchase.
VDRC has 2 RNAi stocks for FBgn0027492 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	2 of 4	0.10	Down
Head	7 ± 1	1 of 4	0.20	Down
Eye	4 ± 1	0 of 4	0.10	Down
Thoracicoabdominal ganglion	3 ± 0	0 of 4	0.10	Down
Salivary gland	5 ± 2	0 of 4	0.12	Down
Crop	19 ± 4	4 of 4	0.50	Down
Midgut	15 ± 2	4 of 4	0.40	Down
Tubule	4 ± 0	0 of 4	0.10	Down
Hindgut	14 ± 2	4 of 4	0.30	Down
Heart	7 ± 1	2 of 4	0.17	Down
Fat body	10 ± 8	2 of 4	0.24	Down
Ovary	87 ± 4	4 of 4	2.00	Up
Testis	2 ± 0	0 of 4	0.10	Down
Male accessory glands	9 ± 1	1 of 4	0.20	Down
Virgin spermatheca	0 ± 0	0 of 4	0.01	Down
Mated spermatheca	0 ± 0	0 of 4	0.02	Down
Adult carcass	23 ± 2	3 of 4	0.60	Down
Larval CNS	6 ± 3	2 of 4	0.16	Down
Larval Salivary gland	9 ± 2	1 of 4	0.22	Down
Larval midgut	7 ± 2	1 of 4	0.18	Down
Larval tubule	36 ± 3	4 of 4	0.90	None
Larval hindgut	8 ± 1	2 of 4	0.21	Down
Larval fat body	11 ± 2	2 of 4	0.30	Down
Larval trachea	8 ± 3	1 of 4	0.20	Down
Larval carcass	6 ± 2	1 of 4	0.16	Down
S2 cells (growing)	62 ± 5	4 of 4	1.47	Up
Whole fly	42 ± 5	4 of 4

Looking for CG5643-RB. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720