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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5648-RA through 18771 annotations produced 1 hits



Prosalpha6T (Prosalpha6T):

Annotation Number : CG5648
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032492
Gbrowse : chr2L:13232038-13233059 (+) // 100.0 //
Probeset : 1641553_at
Accessions : protein= NP_609623;, nucleotide= NM_135779;
Pathway : "0000502 // proteasome complex // inferred from electronic annotation /// 0001673 // male germ cell nucleus // inferred
Interpro : alpha-subunit complex // inferred from electronic annotation"
FlyMine data for FBgn0032492.
Homophila reports that CG5648 is a close match (1e-25) to human gene P27K;PROS27;PSMA6 (NP_002782), a gene associated with {Myocardial infarcation, susceptibility to} (3).
BioGrid reports that CG5648 interacts with CG9014 .
VDRC has 1 RNAi stocks for FBgn0032492 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye2 10 of 4 0.04Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland4 10 of 4 0.08Down
Crop1 00 of 4 0.00Down
Midgut2 10 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart1 00 of 4 0.02Down
Fat body1 00 of 4 0.03Down
Ovary0 00 of 4 0.00Down
Testis725 114 of 412.70Up
Male accessory glands57 184 of 4 1.00None
Virgin spermatheca2 00 of 4 0.03Down
Mated spermatheca3 10 of 4 0.06Down
Adult carcass8 10 of 4 0.20Down
Larval CNS0 00 of 4 0.01Down
Larval Salivary gland3 10 of 4 0.07Down
Larval midgut5 10 of 4 0.10Down
Larval tubule2 00 of 4 0.00Down
Larval hindgut2 10 of 4 0.05Down
Larval fat body59 342 of 4 1.00None
Larval trachea3 30 of 4 0.06Down
Larval carcass1 00 of 4 0.03Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly57 24 of 4

Looking for CG5648-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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