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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG5653-RA through 18771 annotations produced 1 hits


Annotation Number : CG5653
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035943
Gbrowse : chr3L:8958010-8959474 (-) // 100.0 //
Probeset : 1627367_at
Accessions : protein= NP_648269;, nucleotide= NM_140012;
FlyMine data for FBgn0035943.
VDRC has 3 RNAi stocks for FBgn0035943 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.20Down
Head11 14 of 4 0.60Down
Eye29 34 of 4 1.43None
Thoracicoabdominal ganglion4 10 of 4 0.20Down
Salivary gland7 30 of 4 0.37Down
Crop3 20 of 4 0.20Down
Midgut10 30 of 4 0.50None
Tubule2 00 of 4 0.10Down
Hindgut8 11 of 4 0.40Down
Heart1 00 of 4 0.07Down
Fat body6 30 of 4 0.30Down
Ovary4 11 of 4 0.20Down
Testis288 204 of 414.20Up
Male accessory glands10 11 of 4 0.50Down
Virgin spermatheca5 10 of 4 0.25Down
Mated spermatheca6 20 of 4 0.30Down
Adult carcass7 20 of 4 0.40Down
Larval CNS6 02 of 4 0.33Down
Larval Salivary gland3 10 of 4 0.17Down
Larval midgut14 20 of 4 0.70None
Larval tubule4 10 of 4 0.20Down
Larval hindgut3 10 of 4 0.19Down
Larval fat body52 203 of 4 2.60None
Larval trachea1 00 of 4 0.05Down
Larval carcass4 00 of 4 0.23Down
S2 cells (growing)3 10 of 4 0.19Down
Whole fly20 24 of 4

Looking for CG5653-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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