FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5654-RA through 18771 annotations produced 1 hits

Ypsilon Schachtel (yps):

Annotation Number : CG5654
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022959
Gbrowse : chr3L:12114625-12118205 (-) // 100.0 //
Probeset : 1633798_at
Accessions : protein= NP_524033;, nucleotide= NM_079309;
Pathway : via spliceosome // inferred by curator /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0048477 // oogenesis // non-traceable author statement"
FlyMine data for FBgn0022959.
BioGrid reports that CG5654 interacts with CG6459 CG10868 .
TRiP has 3 RNAi stocks for FBgn0022959 available for purchase.
VDRC has 2 RNAi stocks for FBgn0022959 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	723 ± 5	4 of 4	0.80	Down
Head	1198 ± 33	4 of 4	1.40	Up
Eye	2548 ± 65	4 of 4	2.96	Up
Thoracicoabdominal ganglion	471 ± 23	4 of 4	0.50	Down
Salivary gland	645 ± 24	4 of 4	0.75	Down
Crop	927 ± 21	4 of 4	1.10	None
Midgut	309 ± 9	4 of 4	0.40	Down
Tubule	263 ± 11	4 of 4	0.30	Down
Hindgut	706 ± 16	4 of 4	0.80	Down
Heart	508 ± 9	4 of 4	0.59	Down
Fat body	632 ± 62	4 of 4	0.74	Down
Ovary	1095 ± 11	4 of 4	1.30	Up
Testis	908 ± 24	4 of 4	1.10	None
Male accessory glands	1306 ± 64	4 of 4	1.50	Up
Virgin spermatheca	475 ± 23	4 of 4	0.55	Down
Mated spermatheca	601 ± 30	4 of 4	0.70	Down
Adult carcass	580 ± 29	4 of 4	0.70	Down
Larval CNS	1739 ± 118	4 of 4	2.02	Up
Larval Salivary gland	1122 ± 70	4 of 4	1.31	Up
Larval midgut	347 ± 13	4 of 4	0.40	Down
Larval tubule	327 ± 6	4 of 4	0.40	Down
Larval hindgut	884 ± 57	4 of 4	1.03	None
Larval fat body	430 ± 43	4 of 4	0.50	Down
Larval trachea	1106 ± 106	4 of 4	1.29	Up
Larval carcass	1060 ± 124	4 of 4	1.23	None
S2 cells (growing)	1150 ± 27	4 of 4	1.34	Up
Whole fly	859 ± 25	4 of 4

Looking for CG5654-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720