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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG5656-RA through 18771 annotations produced 1 hits


Annotation Number : CG5656
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037083
Gbrowse : chr3L:21435322-21437914 (-) // 100.0 //
Probeset : 1623243_at
Accessions : protein= NP_649315;, nucleotide= NM_141058;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004035 // alkaline phosphatase activity // inf
FlyMine data for FBgn0037083.
BDGP gene expression has embryonic in situ data for CG5656: 32 pix of staining in 13 body parts.
Homophila reports that CG5656 is a close match (2e-102) to human gene (NP_001623), a gene associated with .
TRiP has 1 RNAi stocks for FBgn0037083 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037083 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 20 of 4 0.40None
Head7 11 of 4 0.70None
Eye6 11 of 4 0.62None
Thoracicoabdominal ganglion4 20 of 4 0.40None
Salivary gland24 60 of 4 2.39None
Crop9 31 of 4 1.00None
Midgut11 20 of 4 1.10None
Tubule3 00 of 4 0.30Down
Hindgut10 10 of 4 1.00None
Heart6 00 of 4 0.58None
Fat body10 40 of 4 0.99None
Ovary7 10 of 4 0.70None
Testis5 01 of 4 0.50Down
Male accessory glands10 30 of 4 1.00None
Virgin spermatheca5 10 of 4 0.53None
Mated spermatheca5 20 of 4 0.53None
Adult carcass5 20 of 4 0.50None
Larval CNS6 40 of 4 0.59None
Larval Salivary gland2068 654 of 4200.30Up
Larval midgut27 14 of 4 2.68Up
Larval tubule4 20 of 4 0.40None
Larval hindgut88 154 of 4 8.56Up
Larval fat body4 20 of 4 0.50None
Larval trachea194 684 of 418.87Up
Larval carcass1851 1984 of 4179.31Up
S2 cells (growing)5 10 of 4 0.52None
Whole fly10 10 of 4

Looking for CG5656-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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