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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5657-RA through 18771 annotations produced 1 hits



Sarcoglycan beta (Scgbeta):

Annotation Number : CG5657
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038042
Gbrowse : chr3R:8246955-8248151 (-) // 100.0 //
Probeset : 1634402_at
Accessions : protein= NP_524327;, nucleotide= NM_079603;
Pathway : 0016012 // sarcoglycan complex // inferred from sequence or structural similarity /// 0016012 // sarcoglycan complex //
Interpro : 0008307 // structural constituent of muscle // inferred from sequence or structural similarity
FlyMine data for FBgn0038042.
BDGP gene expression has embryonic in situ data for Scgbeta: 9 pix of staining in 3 body parts.
TRiP has 1 RNAi stocks for FBgn0038042 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038042 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain441 ± 104 of 418.40Up
Head156 ± 64 of 4 6.50Up
Eye377 ± 154 of 415.73Up
Thoracicoabdominal ganglion296 ± 24 of 412.40Up
Salivary gland7 ± 30 of 4 0.31Down
Crop40 ± 24 of 4 1.70Up
Midgut14 ± 10 of 4 0.60Down
Tubule11 ± 11 of 4 0.50Down
Hindgut20 ± 14 of 4 0.90None
Heart44 ± 44 of 4 1.84Up
Fat body8 ± 30 of 4 0.35Down
Ovary3 ± 00 of 4 0.10Down
Testis18 ± 14 of 4 0.70None
Male accessory glands53 ± 104 of 4 2.20None
Virgin spermatheca15 ± 22 of 4 0.66Down
Mated spermatheca12 ± 01 of 4 0.53Down
Adult carcass15 ± 40 of 4 0.70None
Larval CNS235 ± 324 of 4 9.83Up
Larval Salivary gland5 ± 00 of 4 0.24Down
Larval midgut10 ± 10 of 4 0.43Down
Larval tubule9 ± 10 of 4 0.40Down
Larval hindgut18 ± 13 of 4 0.77None
Larval fat body4 ± 10 of 4 0.20Down
Larval trachea14 ± 113 of 4 0.62None
Larval carcass17 ± 32 of 4 0.72None
S2 cells (growing)6 ± 00 of 4 0.27Down
Whole fly24 ± 24 of 4

Looking for CG5657-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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