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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5664-RA through 18771 annotations produced 1 hits



(CG5664):

Annotation Number : CG5664
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037082
Gbrowse : chr3L:21431723-21434423 (-) // 100.0 //
Probeset : 1640198_at
Accessions : protein= NP_649314;, nucleotide= NM_141057;
FlyMine data for FBgn0037082.
TRiP has 1 RNAi stocks for FBgn0037082 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037082 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 ± 24 of 4 1.00None
Head38 ± 14 of 4 0.60Down
Eye44 ± 34 of 4 0.67Down
Thoracicoabdominal ganglion55 ± 34 of 4 0.80None
Salivary gland36 ± 34 of 4 0.55Down
Crop28 ± 34 of 4 0.40Down
Midgut35 ± 44 of 4 0.50Down
Tubule42 ± 14 of 4 0.60Down
Hindgut25 ± 14 of 4 0.40Down
Heart31 ± 34 of 4 0.47Down
Fat body34 ± 34 of 4 0.51Down
Ovary132 ± 14 of 4 2.00Up
Testis144 ± 44 of 4 2.20Up
Male accessory glands33 ± 24 of 4 0.50Down
Virgin spermatheca38 ± 24 of 4 0.58Down
Mated spermatheca42 ± 44 of 4 0.63Down
Adult carcass32 ± 24 of 4 0.50Down
Larval CNS96 ± 154 of 4 1.46Up
Larval Salivary gland32 ± 24 of 4 0.49Down
Larval midgut31 ± 14 of 4 0.48Down
Larval tubule58 ± 04 of 4 0.90None
Larval hindgut23 ± 24 of 4 0.36Down
Larval fat body59 ± 84 of 4 0.90None
Larval trachea57 ± 14 of 4 0.86Down
Larval carcass30 ± 04 of 4 0.46Down
S2 cells (growing)113 ± 34 of 4 1.71Up
Whole fly66 ± 24 of 4

Looking for CG5664-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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