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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5665-RA through 18771 annotations produced 1 hits



(CG5665):

Annotation Number : CG5665
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036977
Gbrowse : chr3L:20351935-20352920 (+) // 100.0 //
Probeset : 1628168_at
Accessions : protein= NP_649213;, nucleotide= NM_140956;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004465 // lipoprotein lipase activity // infer
FlyMine data for FBgn0036977.
Homophila reports that CG5665 is a close match (2e-18) to human gene LIPH (NP_640341), a gene associated with Hypotrichosis, total, Mari type, 604379 (3).
TRiP has 1 RNAi stocks for FBgn0036977 available for purchase.
VDRC has 1 RNAi stocks for FBgn0036977 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 1.20None
Head2 ± 00 of 4 1.10None
Eye4 ± 10 of 4 1.92None
Thoracicoabdominal ganglion4 ± 10 of 4 1.70None
Salivary gland10 ± 20 of 4 4.42None
Crop0 ± 00 of 4 0.40None
Midgut1 ± 00 of 4 0.80None
Tubule4 ± 10 of 4 2.00None
Hindgut2 ± 10 of 4 1.20None
Heart2 ± 00 of 4 0.98None
Fat body2 ± 10 of 4 0.97None
Ovary2 ± 00 of 4 1.00None
Testis2 ± 10 of 4 1.30None
Male accessory glands7 ± 20 of 4 3.20None
Virgin spermatheca5 ± 20 of 4 2.57None
Mated spermatheca3 ± 10 of 4 1.71None
Adult carcass10 ± 30 of 4 4.70None
Larval CNS3 ± 00 of 4 1.46None
Larval Salivary gland3 ± 10 of 4 1.71None
Larval midgut3 ± 10 of 4 1.61None
Larval tubule4 ± 21 of 4 1.90None
Larval hindgut1 ± 00 of 4 0.65None
Larval fat body4 ± 20 of 4 2.00None
Larval trachea1 ± 00 of 4 0.48None
Larval carcass5 ± 20 of 4 2.60None
S2 cells (growing)3 ± 10 of 4 1.46None
Whole fly2 ± 00 of 4

Looking for CG5665-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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