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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5670-RD through 18771 annotations produced 2 hits



March 2006 (FlyBase/BDGP 5.3) (chr3R:16774435-16800053 (+) // 100.0 //):

Annotation Number : CG5670
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : Atpalpha
Gbrowse :
Probeset : 1639145_s_at
Accessions : protein= B5RIT8 /// C8VUY7 /// P13607 /// Q95S08, nucleotide= EC:3.6.3.9
FlyMine data for Atpalpha.
Homophila reports that CG5670 is a close match (1e-11) to human gene ATP7A;MK;MNK;OHS (NP_000043), a gene associated with Cutis laxa, neonatal (3);Menkes disease, 309400 (3);Occipital horn syndrome, 304150 (3).
BioGrid reports that CG5670 interacts with CG6692 CG6864 CG7622 CG8368 CG8884 CG9060 CG9436 CG9653 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1673 564 of 4 2.50Up
Head1115 1174 of 4 1.60Up
Eye1686 1724 of 4 2.47Up
Thoracicoabdominal ganglion2111 1134 of 4 3.10Up
Salivary gland1193 444 of 4 1.75Up
Crop979 384 of 4 1.40Up
Midgut707 354 of 4 1.00None
Tubule5427 2114 of 4 7.90Up
Hindgut3624 854 of 4 5.30Up
Heart536 344 of 4 0.79None
Fat body305 314 of 4 0.45Down
Ovary503 124 of 4 0.70Down
Testis113 74 of 4 0.20Down
Male accessory glands329 114 of 4 0.50Down
Virgin spermatheca292 164 of 4 0.43Down
Mated spermatheca314 74 of 4 0.46Down
Adult carcass683 504 of 4 1.00None
Larval CNS736 1184 of 4 1.08None
Larval Salivary gland479 174 of 4 0.70Down
Larval midgut265 294 of 4 0.39Down
Larval tubule996 284 of 4 1.50Up
Larval hindgut1255 374 of 4 1.84Up
Larval fat body185 134 of 4 0.30Down
Larval trachea778 574 of 4 1.14None
Larval carcass798 724 of 4 1.17None
S2 cells (growing)1256 494 of 4 1.84Up
Whole fly683 504 of 4



March 2006 (FlyBase/BDGP 5.3) (chr3R:16783482-16801017 (+) // 99.9 //):

Annotation Number : CG5670
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : Atpalpha
Gbrowse :
Probeset : 1625719_at
Accessions : protein= B5RIT8 /// C8VUY7 /// P13607 /// Q95S08, nucleotide= EC:3.6.3.9
FlyMine data for Atpalpha.
Homophila reports that CG5670 is a close match (1e-11) to human gene ATP7A;MK;MNK;OHS (NP_000043), a gene associated with Cutis laxa, neonatal (3);Menkes disease, 309400 (3);Occipital horn syndrome, 304150 (3).
BioGrid reports that CG5670 interacts with CG6692 CG6864 CG7622 CG8368 CG8884 CG9060 CG9436 CG9653 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2489 694 of 411.60Up
Head1011 644 of 4 4.70Up
Eye2985 1414 of 413.97Up
Thoracicoabdominal ganglion3106 1174 of 414.50Up
Salivary gland195 84 of 4 0.91None
Crop321 104 of 4 1.50Up
Midgut81 74 of 4 0.40Down
Tubule314 44 of 4 1.50Up
Hindgut812 264 of 4 3.80Up
Heart630 604 of 4 2.95Up
Fat body83 54 of 4 0.39Down
Ovary34 04 of 4 0.20Down
Testis26 24 of 4 0.10Down
Male accessory glands167 104 of 4 0.80None
Virgin spermatheca97 24 of 4 0.46Down
Mated spermatheca123 74 of 4 0.58Down
Adult carcass334 234 of 4 1.60Up
Larval CNS1138 744 of 4 5.33Up
Larval Salivary gland88 84 of 4 0.41Down
Larval midgut72 44 of 4 0.34Down
Larval tubule191 14 of 4 0.90None
Larval hindgut281 194 of 4 1.32Up
Larval fat body40 74 of 4 0.20Down
Larval trachea375 784 of 4 1.76Up
Larval carcass109 64 of 4 0.51Down
S2 cells (growing)163 44 of 4 0.77Down
Whole fly213 154 of 4

Looking for CG5670-RD. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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