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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5677-RA through 18771 annotations produced 1 hits



Spase 22/23-subunit (Spase22-23):

Annotation Number : CG5677
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3R:20054043-20055751 (-) // 100.0 //
Probeset : 1641646_at
Accessions : protein= NP_651234;, nucleotide= NM_142977;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005787 // signal peptidase complex // infer
Interpro : 0008233 // peptidase activity // inferred from sequence or structural similarity /// 0008233 // peptidase activity // no
BioGrid reports that CG5677 interacts with CG7524 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 ± 34 of 4 5.50Up
Head27 ± 54 of 4 2.40Up
Eye36 ± 54 of 4 3.16Up
Thoracicoabdominal ganglion52 ± 24 of 4 4.60Up
Salivary gland47 ± 34 of 4 4.16Up
Crop12 ± 23 of 4 1.10None
Midgut7 ± 04 of 4 0.70None
Tubule12 ± 13 of 4 1.00None
Hindgut10 ± 04 of 4 0.90None
Heart9 ± 14 of 4 0.85None
Fat body29 ± 84 of 4 2.58Up
Ovary11 ± 14 of 4 1.00None
Testis10 ± 04 of 4 0.90None
Male accessory glands80 ± 64 of 4 7.00Up
Virgin spermatheca27 ± 34 of 4 2.37Up
Mated spermatheca29 ± 44 of 4 2.53Up
Adult carcass12 ± 13 of 4 1.10None
Larval CNS104 ± 114 of 4 9.13Up
Larval Salivary gland57 ± 34 of 4 5.04Up
Larval midgut7 ± 13 of 4 0.62None
Larval tubule16 ± 24 of 4 1.50None
Larval hindgut17 ± 24 of 4 1.50None
Larval fat body28 ± 24 of 4 2.40Up
Larval trachea14 ± 24 of 4 1.26None
Larval carcass14 ± 24 of 4 1.31None
S2 cells (growing)11 ± 04 of 4 1.03None
Whole fly11 ± 24 of 4

Looking for CG5677-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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