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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5680-RB through 18771 annotations produced 2 hits



Jun kinase (bsk):

Annotation Number : CG5680
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000229
Gbrowse : chr2L:10247484-10250479 (-) // 100.0 //
Probeset : 1625533_at
Accessions : protein= NP_001162930; /// NP_001162931; /// NP_001162932; /// NP_723541;, nucleotide= NM_001169459; /// NM_001169460; /// NM_001169461; /// NM_164900;
Pathway : spreading of epidermal cells // inferred from mutant phenotype /// 0042060 // wound healing // inferred from direct ass
Interpro : thorax closure // inferred from mutant phenotype /// 0046843 // dorsal appendage formation // inferred from mutant phen
FlyMine data for FBgn0000229.
BDGP gene expression has embryonic in situ data for bsk: 20 pix of staining in 18 body parts.
Homophila reports that CG5680 is a close match (4e-11) to human gene FGFR1;FLT2;KAL2 (NP_075594), a gene associated with Jackson-Weiss syndrome, 123150 (3);Kallmann syndrome 2, 147950 (3);Pfeiffer syndrome, 101600 (3).
BioGrid reports that CG5680 interacts with CG9741 CG7417 CG9373 CG3166 CG11579 CG11579 CG2275 CG2275 CG2275 CG2275 CG2248 CG2248 CG2849 CG7873 CG18492 CG18492 CG2534 CG18361 CG18361 CG18361 CG12919 CG12919 CG17697 CG16973 CG16973 CG16973 CG16973 CG16973 CG16973 CG7892 CG12212 CG12212 CG1857 CG9654 CG31012 CG3850 CG18745 CG5169 CG2049 CG7850 CG33275 CG11238 Dmel CG33956 Dmel CG33956 .
TRiP has 6 RNAi stocks for FBgn0000229 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000229 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1356 184 of 4 4.90Up
Head814 434 of 4 2.90Up
Eye1485 364 of 4 5.37Up
Thoracicoabdominal ganglion1983 544 of 4 7.20Up
Salivary gland462 264 of 4 1.67Up
Crop425 74 of 4 1.50Up
Midgut578 44 of 4 2.10Up
Tubule1076 284 of 4 3.90Up
Hindgut466 44 of 4 1.70Up
Heart435 114 of 4 1.57Up
Fat body281 264 of 4 1.02None
Ovary135 34 of 4 0.50Down
Testis251 74 of 4 0.90Down
Male accessory glands365 44 of 4 1.30Up
Virgin spermatheca414 134 of 4 1.50Up
Mated spermatheca423 134 of 4 1.53Up
Adult carcass308 14 of 4 1.10Up
Larval CNS954 394 of 4 3.45Up
Larval Salivary gland429 124 of 4 1.55Up
Larval midgut581 74 of 4 2.10Up
Larval tubule639 84 of 4 2.30Up
Larval hindgut537 84 of 4 1.94Up
Larval fat body322 134 of 4 1.20Up
Larval trachea688 304 of 4 2.49Up
Larval carcass396 64 of 4 1.44Up
S2 cells (growing)574 34 of 4 2.08Up
Whole fly276 44 of 4



Jun kinase (bsk):

Annotation Number : CG5680
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000229
Gbrowse : chr2L:10248632-10249466 (-) // 100.0 //
Probeset : 1626404_a_at
Accessions : protein= NP_001162930; /// NP_001162931; /// NP_001162932; /// NP_723541;, nucleotide= NM_001169459; /// NM_001169460; /// NM_001169461; /// NM_164900;
Pathway : spreading of epidermal cells // inferred from mutant phenotype /// 0042060 // wound healing // inferred from direct ass
Interpro : thorax closure // inferred from mutant phenotype /// 0046843 // dorsal appendage formation // inferred from mutant phen
FlyMine data for FBgn0000229.
BDGP gene expression has embryonic in situ data for bsk: 20 pix of staining in 18 body parts.
Homophila reports that CG5680 is a close match (4e-11) to human gene FGFR1;FLT2;KAL2 (NP_075594), a gene associated with Jackson-Weiss syndrome, 123150 (3);Kallmann syndrome 2, 147950 (3);Pfeiffer syndrome, 101600 (3).
BioGrid reports that CG5680 interacts with CG9741 CG7417 CG9373 CG3166 CG11579 CG11579 CG2275 CG2275 CG2275 CG2275 CG2248 CG2248 CG2849 CG7873 CG18492 CG18492 CG2534 CG18361 CG18361 CG18361 CG12919 CG12919 CG17697 CG16973 CG16973 CG16973 CG16973 CG16973 CG16973 CG7892 CG12212 CG12212 CG1857 CG9654 CG31012 CG3850 CG18745 CG5169 CG2049 CG7850 CG33275 CG11238 Dmel CG33956 Dmel CG33956 .
TRiP has 6 RNAi stocks for FBgn0000229 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000229 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain631 104 of 4 7.90Up
Head239 294 of 4 3.00Up
Eye516 154 of 4 6.49Up
Thoracicoabdominal ganglion518 454 of 4 6.50Up
Salivary gland112 64 of 4 1.41Up
Crop130 64 of 4 1.60Up
Midgut240 104 of 4 3.00Up
Tubule108 64 of 4 1.40Up
Hindgut162 94 of 4 2.00Up
Heart108 104 of 4 1.36None
Fat body64 134 of 4 0.81None
Ovary44 14 of 4 0.60Down
Testis80 54 of 4 1.00None
Male accessory glands87 44 of 4 1.10None
Virgin spermatheca22 13 of 4 0.28Down
Mated spermatheca21 04 of 4 0.27Down
Adult carcass81 34 of 4 1.00None
Larval CNS300 254 of 4 3.77Up
Larval Salivary gland106 94 of 4 1.34None
Larval midgut99 44 of 4 1.25Up
Larval tubule215 84 of 4 2.70Up
Larval hindgut123 64 of 4 1.54Up
Larval fat body114 54 of 4 1.40Up
Larval trachea176 54 of 4 2.21Up
Larval carcass94 84 of 4 1.19None
S2 cells (growing)279 84 of 4 3.51Up
Whole fly79 44 of 4

Looking for CG5680-RB. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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