FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5685-RA through 18771 annotations produced 1 hits

Na/Ca-exchange protein (Calx):

Annotation Number : CG5685
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013995
Gbrowse : chr3R:16803997-16840182 (+) // 100.0 //
Probeset : 1623234_s_at
Accessions : protein= NP_524423; /// NP_732576; /// NP_732577;, nucleotide= NM_079699; /// NM_169940; /// NM_169941;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from e
Interpro : 0005432 // calcium:sodium antiporter activity // inferred from direct assay /// 0005432 // calcium:sodium antiporter act
FlyMine data for FBgn0013995.
BDGP gene expression has embryonic in situ data for Calx: 23 pix of staining in 7 body parts.
Homophila reports that CG5685 is a close match (9e-11) to human gene FRAS1 (NP_079350), a gene associated with Fraser syndrome, 219000 (3).
TRiP has 1 RNAi stocks for FBgn0013995 available for purchase.
VDRC has 3 RNAi stocks for FBgn0013995 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	123 ± 4	4 of 4	1.60	Up
Head	213 ± 20	4 of 4	2.70	Up
Eye	887 ± 82	4 of 4	11.29	Up
Thoracicoabdominal ganglion	81 ± 5	4 of 4	1.00	None
Salivary gland	19 ± 4	2 of 4	0.24	Down
Crop	218 ± 3	4 of 4	2.80	Up
Midgut	362 ± 7	4 of 4	4.60	Up
Tubule	261 ± 8	4 of 4	3.30	Up
Hindgut	201 ± 3	4 of 4	2.60	Up
Heart	58 ± 6	4 of 4	0.75	Down
Fat body	13 ± 4	0 of 4	0.17	Down
Ovary	42 ± 2	4 of 4	0.50	Down
Testis	46 ± 3	4 of 4	0.60	Down
Male accessory glands	20 ± 0	4 of 4	0.30	Down
Virgin spermatheca	17 ± 1	4 of 4	0.22	Down
Mated spermatheca	25 ± 3	4 of 4	0.32	Down
Adult carcass	112 ± 7	4 of 4	1.40	Up
Larval CNS	25 ± 3	4 of 4	0.32	Down
Larval Salivary gland	8 ± 2	1 of 4	0.11	Down
Larval midgut	188 ± 11	4 of 4	2.40	Up
Larval tubule	138 ± 6	4 of 4	1.80	Up
Larval hindgut	58 ± 3	4 of 4	0.74	Down
Larval fat body	5 ± 2	0 of 4	0.10	Down
Larval trachea	13 ± 14	2 of 4	0.17	Down
Larval carcass	80 ± 11	4 of 4	1.02	None
S2 cells (growing)	14 ± 0	4 of 4	0.19	Down
Whole fly	78 ± 2	4 of 4

Looking for CG5685-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720