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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5697-RA through 18771 annotations produced 1 hits



(CG5697):

Annotation Number : CG5697
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038846
Gbrowse : chr3R:16841670-16842842 (+) // 100.0 //
Probeset : 1632045_at
Accessions : protein= NP_650932;, nucleotide= NM_142675;
FlyMine data for FBgn0038846.
VDRC has 2 RNAi stocks for FBgn0038846 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 01 of 4 0.10Down
Head7 ± 21 of 4 0.10Down
Eye3 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion7 ± 12 of 4 0.10Down
Salivary gland10 ± 20 of 4 0.13Down
Crop7 ± 11 of 4 0.10Down
Midgut19 ± 14 of 4 0.20Down
Tubule3029 ± 1474 of 436.60Up
Hindgut77 ± 124 of 4 0.90None
Heart15 ± 24 of 4 0.19Down
Fat body7 ± 33 of 4 0.09Down
Ovary3 ± 00 of 4 0.00Down
Testis48 ± 44 of 4 0.60None
Male accessory glands9 ± 11 of 4 0.10Down
Virgin spermatheca7 ± 11 of 4 0.09Down
Mated spermatheca5 ± 11 of 4 0.07Down
Adult carcass10 ± 12 of 4 0.10Down
Larval CNS2 ± 00 of 4 0.03Down
Larval Salivary gland6 ± 11 of 4 0.07Down
Larval midgut5 ± 10 of 4 0.06Down
Larval tubule422 ± 444 of 4 5.10Up
Larval hindgut11 ± 12 of 4 0.14Down
Larval fat body534 ± 2744 of 4 6.50None
Larval trachea3 ± 20 of 4 0.05Down
Larval carcass5 ± 11 of 4 0.07Down
S2 cells (growing)32 ± 14 of 4 0.39Down
Whole fly82 ± 144 of 4

Looking for CG5697-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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