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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5699-RA through 18771 annotations produced 1 hits



D-Titin (zormin):

Annotation Number : CG5699
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052311
Gbrowse : chr3L:2122618-2126614 (-) // 100.0 //
Probeset : 1623197_a_at
Accessions : protein= NP_001036577; /// NP_001036578; /// NP_001036579; /// NP_995962;, nucleotide= NM_001043112; /// NM_001043113; /// NM_001043114; /// NM_206240;
Interpro : 0005200 // structural constituent of cytoskeleton // inferred from sequence or structural similarity
FlyMine data for FBgn0052311.
TRiP has 1 RNAi stocks for FBgn0052311 available for purchase.
VDRC has 13 RNAi stocks for FBgn0052311 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain66 04 of 4 0.40Down
Head187 94 of 4 1.30Up
Eye44 24 of 4 0.30Down
Thoracicoabdominal ganglion114 44 of 4 0.80Down
Salivary gland27 53 of 4 0.19Down
Crop1039 284 of 4 6.90Up
Midgut49 34 of 4 0.30Down
Tubule13 03 of 4 0.10Down
Hindgut530 124 of 4 3.50Up
Heart402 324 of 4 2.69Up
Fat body52 44 of 4 0.35Down
Ovary13 14 of 4 0.10Down
Testis22 14 of 4 0.10Down
Male accessory glands137 44 of 4 0.90None
Virgin spermatheca52 34 of 4 0.35Down
Mated spermatheca74 54 of 4 0.50Down
Adult carcass446 324 of 4 3.00Up
Larval CNS61 44 of 4 0.41Down
Larval Salivary gland68 54 of 4 0.46Down
Larval midgut72 64 of 4 0.49Down
Larval tubule15 14 of 4 0.10Down
Larval hindgut447 114 of 4 2.99Up
Larval fat body14 13 of 4 0.10Down
Larval trachea84 244 of 4 0.56Down
Larval carcass686 704 of 4 4.59Up
S2 cells (growing)7 12 of 4 0.05Down
Whole fly149 84 of 4

Looking for CG5699-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime