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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG5703-RA through 18771 annotations produced 1 hits

NADH ubiquinone oxidoreductase 24 kDa (CG5703):

Annotation Number : CG5703
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030853
Gbrowse : chrX:17526121-17527539 (+) // 100.0 //
Probeset : 1628014_at
Accessions : protein= NP_573228;, nucleotide= NM_133000;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred fr
Interpro : 0005747 // mitochondrial respiratory chain complex I // inferred from sequence or structural similarity
FlyMine data for FBgn0030853.
Homophila reports that CG5703 is a close match (2e-91) to human gene NDUFV2 (NP_066552), a gene associated with {Parkinson disease, susceptibility to}, 168600 (3).
BioGrid reports that CG5703 interacts with CG5814 CG9640 .
VDRC has 2 RNAi stocks for FBgn0030853 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain670 164 of 4 0.90None
Head739 104 of 4 1.00None
Eye978 444 of 4 1.30Up
Thoracicoabdominal ganglion896 314 of 4 1.20Up
Salivary gland717 214 of 4 0.96None
Crop614 214 of 4 0.80Down
Midgut611 174 of 4 0.80Down
Tubule583 104 of 4 0.80Down
Hindgut1011 214 of 4 1.30Up
Heart893 64 of 4 1.19Up
Fat body655 1004 of 4 0.87None
Ovary323 74 of 4 0.40Down
Testis205 74 of 4 0.30Down
Male accessory glands331 114 of 4 0.40Down
Virgin spermatheca765 284 of 4 1.02None
Mated spermatheca542 464 of 4 0.72Down
Adult carcass2174 1064 of 4 2.90Up
Larval CNS392 324 of 4 0.52Down
Larval Salivary gland503 304 of 4 0.67Down
Larval midgut487 234 of 4 0.65Down
Larval tubule515 384 of 4 0.70Down
Larval hindgut713 424 of 4 0.95None
Larval fat body251 144 of 4 0.30Down
Larval trachea447 424 of 4 0.60Down
Larval carcass553 474 of 4 0.74Down
S2 cells (growing)348 94 of 4 0.46Down
Whole fly750 394 of 4

Looking for CG5703-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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