FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5705-RA through 18771 annotations produced 1 hits

chr2L:13219987-13221401 (+) // 100.0 // ():

Annotation Number : CG5705
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1637221_at
Accessions : protein= , nucleotide= NP_609617;
Pathway : 0006415 // translational termination // inferred from sequence or structural similarity /// 0006415 // translational ter
Interpro : 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or st
FlyMine data for full length.
BioGrid reports that CG5705 interacts with CG9531 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	86 ± 1	4 of 4	1.20	Up
Head	34 ± 4	4 of 4	0.50	Down
Eye	25 ± 2	4 of 4	0.35	Down
Thoracicoabdominal ganglion	79 ± 0	4 of 4	1.10	None
Salivary gland	55 ± 5	4 of 4	0.76	Down
Crop	41 ± 2	4 of 4	0.60	Down
Midgut	25 ± 2	4 of 4	0.30	Down
Tubule	47 ± 3	4 of 4	0.60	Down
Hindgut	57 ± 1	4 of 4	0.80	Down
Heart	26 ± 3	4 of 4	0.36	Down
Fat body	30 ± 3	4 of 4	0.41	Down
Ovary	153 ± 2	4 of 4	2.10	Up
Testis	27 ± 1	4 of 4	0.40	Down
Male accessory glands	26 ± 3	4 of 4	0.40	Down
Virgin spermatheca	30 ± 2	4 of 4	0.41	Down
Mated spermatheca	33 ± 2	4 of 4	0.46	Down
Adult carcass	39 ± 3	4 of 4	0.50	Down
Larval CNS	64 ± 10	4 of 4	0.88	None
Larval Salivary gland	40 ± 3	4 of 4	0.55	Down
Larval midgut	23 ± 0	4 of 4	0.32	Down
Larval tubule	37 ± 1	4 of 4	0.50	Down
Larval hindgut	47 ± 3	4 of 4	0.64	Down
Larval fat body	35 ± 3	4 of 4	0.50	Down
Larval trachea	31 ± 2	4 of 4	0.43	Down
Larval carcass	37 ± 2	4 of 4	0.51	Down
S2 cells (growing)	35 ± 0	4 of 4	0.49	Down
Whole fly	73 ± 3	4 of 4

Looking for CG5705-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720