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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5714-RA through 18771 annotations produced 1 hits



ecdysoneless (ecd):

Annotation Number : CG5714
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000543
Gbrowse : chr3L:2263580-2265811 (-) // 100.0 //
Probeset : 1637217_at
Accessions : protein= NP_647707;, nucleotide= NM_139450;
Pathway : chitin-based cuticle // inferred from mutant phenotype /// 0008258 // head involution // inferred from mutant phenotype
Interpro : 0005737 // cytoplasm // inferred from electronic annotation
FlyMine data for FBgn0000543.
TRiP has 1 RNAi stocks for FBgn0000543 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000543 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain140 64 of 4 1.60Up
Head70 54 of 4 0.80None
Eye70 34 of 4 0.81Down
Thoracicoabdominal ganglion82 44 of 4 0.90None
Salivary gland62 84 of 4 0.72Down
Crop102 64 of 4 1.20None
Midgut47 14 of 4 0.50Down
Tubule45 44 of 4 0.50Down
Hindgut58 24 of 4 0.70Down
Heart66 14 of 4 0.76Down
Fat body50 44 of 4 0.58Down
Ovary111 74 of 4 1.30Up
Testis44 14 of 4 0.50Down
Male accessory glands56 44 of 4 0.70Down
Virgin spermatheca40 04 of 4 0.46Down
Mated spermatheca41 24 of 4 0.48Down
Adult carcass84 54 of 4 1.00None
Larval CNS135 144 of 4 1.57Up
Larval Salivary gland57 53 of 4 0.67Down
Larval midgut56 44 of 4 0.65Down
Larval tubule83 44 of 4 1.00None
Larval hindgut52 44 of 4 0.60Down
Larval fat body88 54 of 4 1.00None
Larval trachea105 54 of 4 1.22Up
Larval carcass85 54 of 4 0.99None
S2 cells (growing)124 74 of 4 1.44Up
Whole fly86 44 of 4

Looking for CG5714-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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