FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5718-RA through 18771 annotations produced 1 hits

Succinate dehydrogenase Flavoprotein subunit (CG5718):

Annotation Number : CG5718
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036222
Gbrowse : chr3L:11915709-11917857 (-) // 99.68 //
Probeset : 1641313_at
Accessions : protein= NP_648523;, nucleotide= NM_140266;
Pathway : 0005749 // mitochondrial respiratory chain complex II // inferred from sequence or structural similarity
Interpro : "0008177 // succinate dehydrogenase (ubiquinone) activity // inferred from sequence or structural similarity /// 0008177
FlyMine data for FBgn0036222.
BDGP gene expression has embryonic in situ data for CG5718: 2 pix of staining in 1 body parts.
Homophila reports that CG5718 is a close match (0) to human gene SDHA;SDH2;SDHF (NP_004159), a gene associated with Leigh syndrome, 256000 (3);Mitochondrial respiratory chain complex II deficiency, 252011 (3).
VDRC has 3 RNAi stocks for FBgn0036222 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	1 of 4	0.20	Down
Head	3 ± 0	0 of 4	0.10	Down
Eye	1 ± 0	0 of 4	0.04	Down
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.10	Down
Salivary gland	21 ± 4	1 of 4	0.64	None
Crop	7 ± 2	1 of 4	0.20	Down
Midgut	5 ± 1	0 of 4	0.20	Down
Tubule	7 ± 0	0 of 4	0.20	Down
Hindgut	7 ± 1	0 of 4	0.20	Down
Heart	3 ± 1	0 of 4	0.09	Down
Fat body	7 ± 4	0 of 4	0.22	Down
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	460 ± 18	4 of 4	13.50	Up
Male accessory glands	11 ± 3	1 of 4	0.30	Down
Virgin spermatheca	6 ± 2	0 of 4	0.20	Down
Mated spermatheca	12 ± 3	2 of 4	0.37	Down
Adult carcass	5 ± 1	0 of 4	0.20	Down
Larval CNS	5 ± 3	1 of 4	0.17	Down
Larval Salivary gland	10 ± 1	1 of 4	0.29	Down
Larval midgut	3 ± 1	0 of 4	0.10	Down
Larval tubule	6 ± 1	0 of 4	0.20	Down
Larval hindgut	4 ± 1	0 of 4	0.14	Down
Larval fat body	44 ± 19	4 of 4	1.30	None
Larval trachea	1 ± 1	0 of 4	0.05	Down
Larval carcass	6 ± 1	0 of 4	0.19	Down
S2 cells (growing)	3 ± 1	0 of 4	0.10	Down
Whole fly	34 ± 2	4 of 4

Looking for CG5718-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720