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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5719-RA through 18771 annotations produced 1 hits



(CG33958):

Annotation Number : CG5719
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053958
Gbrowse : chr2R:14072290-14074891 (-) // 100.0 //
Probeset : 1630838_at
Accessions : protein= NP_001033958; /// NP_001137697;, nucleotide= NM_001038869; /// NM_001144225;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferr
FlyMine data for FBgn0053958.
TRiP has 1 RNAi stocks for FBgn0053958 available for purchase.
VDRC has 6 RNAi stocks for FBgn0053958 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 10 of 4 4.60Up
Head4 ± 10 of 4 1.10None
Eye6 ± 10 of 4 1.51None
Thoracicoabdominal ganglion4 ± 10 of 4 1.20None
Salivary gland3 ± 00 of 4 0.75None
Crop1 ± 00 of 4 0.30None
Midgut6 ± 20 of 4 1.70None
Tubule5 ± 00 of 4 1.40Up
Hindgut1 ± 00 of 4 0.30None
Heart4 ± 10 of 4 1.01None
Fat body2 ± 20 of 4 0.66None
Ovary1 ± 00 of 4 0.50None
Testis4 ± 10 of 4 1.10None
Male accessory glands4 ± 20 of 4 1.20None
Virgin spermatheca7 ± 00 of 4 1.93Up
Mated spermatheca7 ± 00 of 4 1.95Up
Adult carcass7 ± 30 of 4 1.90None
Larval CNS2 ± 10 of 4 0.70None
Larval Salivary gland6 ± 10 of 4 1.68None
Larval midgut5 ± 20 of 4 1.24None
Larval tubule2 ± 10 of 4 0.60None
Larval hindgut3 ± 00 of 4 0.76None
Larval fat body6 ± 20 of 4 1.50None
Larval trachea9 ± 20 of 4 2.35Up
Larval carcass1 ± 00 of 4 0.48None
S2 cells (growing)0 ± 00 of 4 0.21None
Whole fly4 ± 10 of 4

Looking for CG5719-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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