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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5721-RA through 18771 annotations produced 1 hits



/// (CG5721 /// DmirCG5721):

Annotation Number : CG5721
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034315
Gbrowse : chr2R:14069931-14071618 (-) // 100.0 //
Probeset : 1634043_at
Accessions : protein= NP_611306;, nucleotide= NM_137462;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0034315.
BDGP gene expression has embryonic in situ data for CG5721: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0034315 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain112 ± 34 of 4 0.60Down
Head157 ± 24 of 4 0.80Down
Eye136 ± 54 of 4 0.68Down
Thoracicoabdominal ganglion132 ± 14 of 4 0.70Down
Salivary gland277 ± 114 of 4 1.38Up
Crop328 ± 114 of 4 1.60Up
Midgut258 ± 114 of 4 1.30Up
Tubule219 ± 54 of 4 1.10Up
Hindgut208 ± 44 of 4 1.00None
Heart196 ± 84 of 4 0.98None
Fat body159 ± 54 of 4 0.79Down
Ovary276 ± 24 of 4 1.40Up
Testis278 ± 74 of 4 1.40Up
Male accessory glands173 ± 94 of 4 0.90None
Virgin spermatheca132 ± 54 of 4 0.66Down
Mated spermatheca133 ± 54 of 4 0.66Down
Adult carcass134 ± 74 of 4 0.70Down
Larval CNS218 ± 104 of 4 1.09None
Larval Salivary gland270 ± 104 of 4 1.35Up
Larval midgut256 ± 154 of 4 1.28Up
Larval tubule612 ± 34 of 4 3.00Up
Larval hindgut293 ± 154 of 4 1.46Up
Larval fat body233 ± 104 of 4 1.20None
Larval trachea334 ± 204 of 4 1.67Up
Larval carcass249 ± 134 of 4 1.24Up
S2 cells (growing)334 ± 64 of 4 1.66Up
Whole fly200 ± 94 of 4

Looking for CG5721-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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