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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG5723-RB through 18771 annotations produced 1 hits

tenascin major (Ten-m):

Annotation Number : CG5723
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004449
Gbrowse : chr3L:22286131-22400987 (-) // 100.0 //
Probeset : 1623490_at
Accessions : protein= NP_001097661; /// NP_524215;, nucleotide= NM_001104191; /// NM_079491;
Pathway : 0005578 // proteinaceous extracellular matrix // inferred from sequence or structural similarity /// 0005887 // integral
FlyMine data for FBgn0004449.
Homophila reports that CG5723 is a close match (9e-11) to human gene CD18;ITGB2;LAD;LCAMB (NP_000202), a gene associated with Leukocyte adhesion deficiency, 116920 (3).
TRiP has 1 RNAi stocks for FBgn0004449 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004449 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain795 254 of 411.10Up
Head214 104 of 4 3.00Up
Eye150 94 of 4 2.10Up
Thoracicoabdominal ganglion768 314 of 410.80Up
Salivary gland29 24 of 4 0.41Down
Crop103 24 of 4 1.40Up
Midgut50 64 of 4 0.70Down
Tubule27 24 of 4 0.40Down
Hindgut59 24 of 4 0.80Down
Heart557 244 of 4 7.81Up
Fat body118 124 of 4 1.65Up
Ovary17 04 of 4 0.20Down
Testis47 14 of 4 0.70Down
Male accessory glands25 14 of 4 0.40Down
Virgin spermatheca116 84 of 4 1.63Up
Mated spermatheca123 84 of 4 1.73Up
Adult carcass148 74 of 4 2.10Up
Larval CNS656 584 of 4 9.19Up
Larval Salivary gland23 24 of 4 0.33Down
Larval midgut37 24 of 4 0.53Down
Larval tubule15 24 of 4 0.20Down
Larval hindgut49 34 of 4 0.69Down
Larval fat body117 104 of 4 1.60Up
Larval trachea610 444 of 4 8.56Up
Larval carcass178 94 of 4 2.49Up
S2 cells (growing)846 354 of 411.86Up
Whole fly71 24 of 4

Looking for CG5723-RB. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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