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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5724-RA through 18771 annotations produced 1 hits



(CG5724):

Annotation Number : CG5724
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038082
Gbrowse : chr3R:8565383-8567042 (+) // 100.0 //
Probeset : 1638903_at
Accessions : protein= NP_650228;, nucleotide= NM_141971;
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0015020 // glucuronosyltransferase activity // inf
FlyMine data for FBgn0038082.
Homophila reports that CG5724 is a close match (8e-36) to human gene GNT1;UGT1;UGT1A1 (NP_000454), a gene associated with Crigler-Najjar syndrome, type I, 218800 (3);Crigler-Najjar syndrome, type II, 606785 (3);Hyperbilirubinemia, familial transcient neonatal, 237900 (3);[Gilbert syndrome], 143500 (3).
BioGrid reports that CG5724 interacts with CG6724 .
VDRC has 4 RNAi stocks for FBgn0038082 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00None
Head2 ± 00 of 4 0.00None
Eye3 ± 11 of 4 0.07None
Thoracicoabdominal ganglion2 ± 10 of 4 0.10None
Salivary gland7 ± 50 of 4 0.15None
Crop2 ± 10 of 4 0.10None
Midgut1039 ± 524 of 419.80Up
Tubule9 ± 41 of 4 0.20Down
Hindgut139 ± 54 of 4 2.70Up
Heart2 ± 10 of 4 0.04None
Fat body1 ± 00 of 4 0.02None
Ovary1 ± 00 of 4 0.00None
Testis2 ± 00 of 4 0.00None
Male accessory glands2 ± 10 of 4 0.10None
Virgin spermatheca2 ± 00 of 4 0.05None
Mated spermatheca1 ± 00 of 4 0.03None
Adult carcass6 ± 10 of 4 0.10None
Larval CNS2 ± 10 of 4 0.04None
Larval Salivary gland3 ± 10 of 4 0.06None
Larval midgut432 ± 344 of 4 8.23Up
Larval tubule4 ± 00 of 4 0.10None
Larval hindgut17 ± 34 of 4 0.33None
Larval fat body3 ± 10 of 4 0.10None
Larval trachea2 ± 10 of 4 0.05None
Larval carcass5 ± 10 of 4 0.10None
S2 cells (growing)3 ± 10 of 4 0.07None
Whole fly52 ± 164 of 4

Looking for CG5724-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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