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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG5726-RA through 18771 annotations produced 1 hits


Annotation Number : CG5726
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034313
Gbrowse : chr2R:14062782-14067674 (-) // 100.0 //
Probeset : 1633517_at
Accessions : protein= NP_611304;, nucleotide= NM_137460;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0034313.
BDGP gene expression has embryonic in situ data for CG5726: 4 pix of staining in 1 body parts.
BioGrid reports that CG5726 interacts with CG9235 CG9412 CG9426 .
TRiP has 1 RNAi stocks for FBgn0034313 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034313 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain280 64 of 4 1.00None
Head108 44 of 4 0.40Down
Eye50 24 of 4 0.19Down
Thoracicoabdominal ganglion233 54 of 4 0.90None
Salivary gland126 74 of 4 0.47Down
Crop192 44 of 4 0.70Down
Midgut122 14 of 4 0.50Down
Tubule150 64 of 4 0.60Down
Hindgut185 64 of 4 0.70Down
Heart137 94 of 4 0.51Down
Fat body172 94 of 4 0.64Down
Ovary666 174 of 4 2.50Up
Testis23 14 of 4 0.10Down
Male accessory glands192 104 of 4 0.70Down
Virgin spermatheca201 104 of 4 0.75Down
Mated spermatheca200 164 of 4 0.74Down
Adult carcass114 144 of 4 0.40Down
Larval CNS241 154 of 4 0.90None
Larval Salivary gland176 94 of 4 0.65Down
Larval midgut86 54 of 4 0.32Down
Larval tubule238 34 of 4 0.90None
Larval hindgut218 44 of 4 0.81None
Larval fat body171 24 of 4 0.60Down
Larval trachea224 284 of 4 0.83None
Larval carcass198 124 of 4 0.74Down
S2 cells (growing)268 114 of 4 1.00None
Whole fly269 194 of 4

Looking for CG5726-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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