FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5728-RA through 18771 annotations produced 1 hits

(CG5728):

Annotation Number : CG5728
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039182
Gbrowse : chr3R:20154174-20159036 (-) // 100.0 //
Probeset : 1631180_at
Accessions : protein= NP_651245;, nucleotide= NM_142988;
Pathway : via spliceosome // inferred from mutant phenotype /// 0006364 // rRNA processing // inferred from sequence or structura
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred by curator /// 000563
FlyMine data for FBgn0039182.
BDGP gene expression has embryonic in situ data for CG5728: 20 pix of staining in 18 body parts.
TRiP has 1 RNAi stocks for FBgn0039182 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039182 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	85 ± 5	4 of 4	0.40	Down
Head	87 ± 7	4 of 4	0.40	Down
Eye	72 ± 4	4 of 4	0.37	Down
Thoracicoabdominal ganglion	95 ± 4	4 of 4	0.50	Down
Salivary gland	73 ± 9	4 of 4	0.37	Down
Crop	100 ± 10	4 of 4	0.50	Down
Midgut	78 ± 5	4 of 4	0.40	Down
Tubule	75 ± 8	4 of 4	0.40	Down
Hindgut	68 ± 2	4 of 4	0.40	Down
Heart	81 ± 10	4 of 4	0.42	Down
Fat body	92 ± 17	4 of 4	0.47	Down
Ovary	426 ± 6	4 of 4	2.20	Up
Testis	35 ± 1	4 of 4	0.20	Down
Male accessory glands	401 ± 9	4 of 4	2.10	Up
Virgin spermatheca	88 ± 8	4 of 4	0.45	Down
Mated spermatheca	125 ± 4	4 of 4	0.64	Down
Adult carcass	85 ± 1	4 of 4	0.40	Down
Larval CNS	218 ± 15	4 of 4	1.12	None
Larval Salivary gland	124 ± 13	4 of 4	0.64	Down
Larval midgut	52 ± 4	4 of 4	0.27	Down
Larval tubule	27 ± 1	4 of 4	0.10	Down
Larval hindgut	127 ± 16	4 of 4	0.65	Down
Larval fat body	29 ± 0	3 of 4	0.20	Down
Larval trachea	260 ± 33	4 of 4	1.33	Up
Larval carcass	185 ± 56	4 of 4	0.95	None
S2 cells (growing)	198 ± 9	4 of 4	1.02	None
Whole fly	195 ± 11	4 of 4

Looking for CG5728-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720