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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5738-RB through 18771 annotations produced 1 hits



():

Annotation Number : CG5738
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr2R:14041825-14045697 (-) // 100.0 //
Probeset : 1640311_s_at
Accessions : protein= NP_001163186; /// NP_524778; /// NP_725756; /// NP_725757; /// NP_725758;, nucleotide= NM_001169715; /// NM_080039; /// NM_166270; /// NM_166271; /// NM_166272;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007435 // salivary gland morphogenesis // inferred from mut
Interpro : DNA-dependent // inferred from genetic interaction /// 0045892 // negative regulation of transcription
BioGrid reports that CG5738 interacts with CG7230 CG6891 CG5460 CG3936 CG18412 CG18412 CG33261 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain782 ± 274 of 4 1.60Up
Head536 ± 244 of 4 1.10None
Eye851 ± 594 of 4 1.72Up
Thoracicoabdominal ganglion728 ± 114 of 4 1.50Up
Salivary gland229 ± 164 of 4 0.46Down
Crop422 ± 284 of 4 0.90None
Midgut291 ± 104 of 4 0.60Down
Tubule125 ± 14 of 4 0.30Down
Hindgut383 ± 194 of 4 0.80Down
Heart578 ± 244 of 4 1.17None
Fat body416 ± 314 of 4 0.84None
Ovary786 ± 154 of 4 1.60Up
Testis159 ± 104 of 4 0.30Down
Male accessory glands373 ± 164 of 4 0.80Down
Virgin spermatheca319 ± 284 of 4 0.64Down
Mated spermatheca379 ± 294 of 4 0.77Down
Adult carcass319 ± 174 of 4 0.60Down
Larval CNS903 ± 154 of 4 1.82Up
Larval Salivary gland330 ± 334 of 4 0.67Down
Larval midgut252 ± 54 of 4 0.51Down
Larval tubule343 ± 104 of 4 0.70Down
Larval hindgut371 ± 244 of 4 0.75Down
Larval fat body629 ± 624 of 4 1.30None
Larval trachea704 ± 294 of 4 1.42Up
Larval carcass383 ± 214 of 4 0.77Down
S2 cells (growing)606 ± 94 of 4 1.22Up
Whole fly496 ± 294 of 4

Looking for CG5738-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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