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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5740-RA through 18771 annotations produced 1 hits



CG33334 (CG42390):

Annotation Number : CG5740
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259736
Gbrowse : chr3R:17952003-17959093 (+) // 100.0 //
Probeset : 1628867_s_at
Accessions : protein= NP_651010; /// NP_732702; /// NP_996263;, nucleotide= NM_142753; /// NM_169996; /// NM_206540; /// NM_206540;
FlyMine data for FBgn0259736.
VDRC has 3 RNAi stocks for FBgn0259736 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain186 ± 94 of 4 0.90None
Head277 ± 144 of 4 1.40Up
Eye255 ± 94 of 4 1.25Up
Thoracicoabdominal ganglion286 ± 84 of 4 1.40Up
Salivary gland433 ± 114 of 4 2.12Up
Crop1050 ± 394 of 4 5.10Up
Midgut118 ± 34 of 4 0.60Down
Tubule33 ± 24 of 4 0.20Down
Hindgut590 ± 64 of 4 2.90Up
Heart1287 ± 424 of 4 6.28Up
Fat body66 ± 74 of 4 0.32Down
Ovary13 ± 04 of 4 0.10Down
Testis47 ± 34 of 4 0.20Down
Male accessory glands129 ± 124 of 4 0.60Down
Virgin spermatheca41 ± 34 of 4 0.20Down
Mated spermatheca67 ± 84 of 4 0.33Down
Adult carcass677 ± 494 of 4 3.30Up
Larval CNS61 ± 34 of 4 0.30Down
Larval Salivary gland11 ± 20 of 4 0.06Down
Larval midgut99 ± 64 of 4 0.48Down
Larval tubule20 ± 43 of 4 0.10Down
Larval hindgut501 ± 224 of 4 2.44Up
Larval fat body48 ± 84 of 4 0.20Down
Larval trachea61 ± 304 of 4 0.30Down
Larval carcass416 ± 324 of 4 2.03Up
S2 cells (growing)18 ± 14 of 4 0.09Down
Whole fly204 ± 134 of 4

Looking for CG5740-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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