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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5744-RB through 18771 annotations produced 1 hits



frequenin (Frq1):

Annotation Number : CG5744
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030897
Gbrowse : chrX:18049400-18064555 (+) // 100.0 //
Probeset : 1639292_at
Accessions : protein= NP_001033853; /// NP_573271;, nucleotide= NM_001038764; /// NM_133043;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0045202 // synapse // non-traceable author statement
Interpro : 0005509 // calcium ion binding // inferred from direct assay /// 0005509 // calcium ion binding // non-traceable author
FlyMine data for FBgn0030897.
BDGP gene expression has embryonic in situ data for CG5744: 3 pix of staining in 2 body parts.
Homophila reports that CG5744 is a close match (2e-25) to human gene GCAP;GUCA1A (NP_000400), a gene associated with Cone dystrophy-3, 602093 (3).
BioGrid reports that CG5744 interacts with CG7518 CG8224 .
TRiP has 1 RNAi stocks for FBgn0030897 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030897 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain584 224 of 438.60Up
Head75 54 of 4 5.00Up
Eye100 184 of 4 6.65Up
Thoracicoabdominal ganglion585 204 of 438.70Up
Salivary gland9 10 of 4 0.59None
Crop83 54 of 4 5.50Up
Midgut10 14 of 4 0.70None
Tubule10 03 of 4 0.70Down
Hindgut9 04 of 4 0.60None
Heart4 10 of 4 0.30Down
Fat body9 44 of 4 0.62None
Ovary1 00 of 4 0.10Down
Testis3 12 of 4 0.20Down
Male accessory glands31 34 of 4 2.10Up
Virgin spermatheca12 14 of 4 0.80None
Mated spermatheca13 33 of 4 0.86None
Adult carcass11 31 of 4 0.70None
Larval CNS186 174 of 412.32Up
Larval Salivary gland3 10 of 4 0.23Down
Larval midgut27 34 of 4 1.78Up
Larval tubule5 22 of 4 0.40Down
Larval hindgut13 14 of 4 0.91None
Larval fat body5 10 of 4 0.40Down
Larval trachea4 11 of 4 0.29Down
Larval carcass4 01 of 4 0.30Down
S2 cells (growing)2 00 of 4 0.19Down
Whole fly15 24 of 4

Looking for CG5744-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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